Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2091829..2091973 | Replicon | chromosome |
| Accession | NZ_CP041125 | ||
| Organism | Serratia marcescens strain WVU-004 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2091873..2091969 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2091829..2091973 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FG169_RS10040 | 2087027..2087452 | + | 426 | WP_033653830.1 | RNA polymerase-binding protein DksA | - |
| FG169_RS10045 | 2087647..2088600 | + | 954 | WP_141958825.1 | prolyl aminopeptidase | - |
| FG169_RS10050 | 2088634..2088864 | - | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| FG169_RS10055 | 2089209..2089727 | + | 519 | WP_141958827.1 | non-heme ferritin | - |
| FG169_RS10060 | 2090020..2090436 | + | 417 | WP_046686875.1 | CopC domain-containing protein YobA | - |
| FG169_RS10065 | 2090439..2091320 | + | 882 | WP_126193118.1 | copper homeostasis membrane protein CopD | - |
| FG169_RS10070 | 2091390..2091731 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2091829..2091973 | - | 145 | - | - | Antitoxin |
| - | 2091873..2091969 | + | 97 | - | - | Toxin |
| FG169_RS10075 | 2092048..2093130 | - | 1083 | WP_141958829.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FG169_RS10080 | 2093105..2093377 | - | 273 | WP_072022390.1 | hypothetical protein | - |
| FG169_RS10085 | 2093453..2093956 | - | 504 | WP_060444327.1 | siphovirus Gp157 family protein | - |
| FG169_RS10090 | 2093953..2096085 | - | 2133 | WP_141958831.1 | hypothetical protein | - |
| FG169_RS10095 | 2096100..2096420 | - | 321 | WP_141958833.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2085217..2135592 | 50375 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T127660 NZ_CP041125:2091873-2091969 [Serratia marcescens]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 145 bp
>AT127660 NZ_CP041125:c2091973-2091829 [Serratia marcescens]
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AGTTAAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
