Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 2243527..2244125 Replicon chromosome
Accession NZ_CP041090
Organism Bradyrhizobium symbiodeficiens strain 65S1MB

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FJN17_RS10275 Protein ID WP_140479518.1
Coordinates 2243527..2243820 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FJN17_RS10280 Protein ID WP_140479520.1
Coordinates 2243817..2244125 (-) Length 103 a.a.

Genomic Context

FJN17_RS10235FJN17_RS10245FJN17_RS10250FJN17_RS34465FJN17_RS10270FJN17_RS10285FJN17_RS34025FJN17_RS10305FJN17_RS34470FJN17_RS34475FJN17_RS10310FJN17_RS10260FJN17_RS10265FJN17_RS10275FJN17_RS10280FJN17_RS10290FJN17_RS10295FJN17_RS10300
Location: 2238544..2240208 (1665 bp)
Type: Others
Protein ID: WP_140479508.1
Location: 2240523..2240777 (255 bp)
Type: Others
Protein ID: WP_094974274.1
Location: 2240834..2241079 (246 bp)
Type: Others
Protein ID: WP_094974273.1
Location: 2241085..2241252 (168 bp)
Type: Others
Protein ID: WP_140479510.1
Location: 2243037..2243204 (168 bp)
Type: Others
Protein ID: WP_140479516.1
Location: 2244196..2244474 (279 bp)
Type: Others
Protein ID: WP_140479522.1
Location: 2244606..2244743 (138 bp)
Type: Others
Protein ID: WP_155527927.1
Location: 2246671..2246967 (297 bp)
Type: Others
Protein ID: WP_094896974.1
Location: 2247425..2247562 (138 bp)
Type: Others
Protein ID: WP_162848650.1
Location: 2248121..2248267 (147 bp)
Type: Others
Protein ID: WP_162848651.1
Location: 2248591..2248788 (198 bp)
Type: Others
Protein ID: WP_140479526.1
Location: 2241380..2242018 (639 bp)
Type: Others
Protein ID: WP_140479512.1
Location: 2242322..2242774 (453 bp)
Type: Others
Protein ID: WP_140479514.1
Location: 2243527..2243820 (294 bp)
Type: Toxin
Protein ID: WP_140479518.1
Location: 2243817..2244125 (309 bp)
Type: Antitoxin
Protein ID: WP_140479520.1
Location: 2244920..2245192 (273 bp)
Type: Others
Protein ID: WP_094974269.1
Location: 2245414..2245716 (303 bp)
Type: Others
Protein ID: WP_094974268.1
Location: 2245829..2246320 (492 bp)
Type: Others
Protein ID: WP_140479524.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FJN17_RS102352238544..2240208+1665WP_140479508.1hypothetical protein-
FJN17_RS102452240523..2240777+255WP_094974274.1PilZ domain-containing protein-
FJN17_RS102502240834..2241079+246WP_094974273.1hypothetical protein-
FJN17_RS344652241085..2241252+168WP_140479510.1hypothetical protein-
FJN17_RS102602241380..2242018-639WP_140479512.1glutathione S-transferase-
FJN17_RS102652242322..2242774-453WP_140479514.1VOC family protein-
FJN17_RS102702243037..2243204+168WP_140479516.1H-NS histone family protein-
FJN17_RS102752243527..2243820-294WP_140479518.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FJN17_RS102802243817..2244125-309WP_140479520.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
FJN17_RS102852244196..2244474+279WP_140479522.1hypothetical protein-
FJN17_RS340252244606..2244743+138WP_155527927.1hypothetical protein-
FJN17_RS102902244920..2245192-273WP_094974269.1hypothetical protein-
FJN17_RS102952245414..2245716-303WP_094974268.1hypothetical protein-
FJN17_RS103002245829..2246320-492WP_140479524.1hypothetical protein-
FJN17_RS103052246671..2246967+297WP_094896974.1HU family DNA-binding protein-
FJN17_RS344702247425..2247562+138WP_162848650.1hypothetical protein-
FJN17_RS344752248121..2248267+147WP_162848651.1hypothetical protein-
FJN17_RS103102248591..2248788+198WP_140479526.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-54)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 10739.26 Da        Isoelectric Point: 5.1255

>T127566 WP_140479518.1 NZ_CP041090:c2243820-2243527 [Bradyrhizobium symbiodeficiens]
VKLVWSAFAMSDRDGIFTHIEAENPRAAIALDERIAAAARRLVEFPESGRPGRVAGTRELVIVGTPYVAAYTVTESLIRI
LRILHGAQQWPDELPED

Download         Length: 294 bp

>T127566 NZ_CP041090:c2243820-2243527 [Bradyrhizobium symbiodeficiens]
GTGAAGCTCGTCTGGTCTGCCTTCGCGATGTCGGACCGCGACGGCATCTTCACTCACATCGAGGCCGAAAATCCTCGGGC
GGCCATCGCGCTCGACGAACGTATCGCCGCGGCTGCGCGTCGACTTGTCGAGTTTCCGGAAAGTGGGCGTCCCGGCCGTG
TCGCCGGCACACGCGAGCTCGTCATTGTCGGCACACCGTATGTCGCTGCCTATACCGTAACGGAAAGCTTGATCCGGATA
TTGCGCATCCTGCACGGCGCCCAGCAATGGCCCGATGAGCTTCCGGAAGATTAA

Antitoxin


Download         Length: 103 a.a.        Molecular weight: 11214.56 Da        Isoelectric Point: 5.7471

>AT127566 WP_140479520.1 NZ_CP041090:c2244125-2243817 [Bradyrhizobium symbiodeficiens]
MAANALVQTRIDAKVRDRASAVLEGMGLTVSDAVRILLTRTANEGALPLELVTNSKAHDAWFRAKVLEALNDTRPDTSDE
QAEAHFAERRAAARRRTDELES

Download         Length: 309 bp

>AT127566 NZ_CP041090:c2244125-2243817 [Bradyrhizobium symbiodeficiens]
ATGGCCGCAAATGCCCTTGTCCAGACCCGCATCGACGCGAAAGTCCGTGATCGCGCATCTGCTGTGCTTGAGGGTATGGG
GCTGACGGTATCGGACGCGGTACGCATCCTGCTGACCCGGACCGCCAACGAGGGCGCGCTGCCGCTCGAACTCGTCACGA
ACAGCAAGGCTCACGACGCCTGGTTTCGCGCGAAGGTTCTGGAAGCGTTGAACGACACACGGCCCGATACCTCTGACGAA
CAGGCCGAGGCGCATTTCGCCGAGCGGCGCGCGGCGGCCCGACGCAGAACGGATGAACTGGAGTCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References