Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2072726..2072871 | Replicon | chromosome |
| Accession | NZ_CP041082 | ||
| Organism | Klebsiella pneumoniae strain Kp202 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2072762..2072864 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2072726..2072871 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FJV42_RS10340 | 2067856..2069916 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FJV42_RS10345 | 2069920..2070579 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FJV42_RS10350 | 2070658..2070888 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FJV42_RS10355 | 2071001..2071375 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FJV42_RS10360 | 2071379..2072248 | + | 870 | WP_023282759.1 | copper homeostasis membrane protein CopD | - |
| FJV42_RS10365 | 2072265..2072603 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2072726..2072871 | - | 146 | - | - | Antitoxin |
| - | 2072762..2072864 | + | 103 | - | - | Toxin |
| FJV42_RS10375 | 2073239..2073382 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FJV42_RS10380 | 2073487..2074455 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FJV42_RS10385 | 2074612..2075265 | + | 654 | WP_032418800.1 | protein-serine/threonine phosphatase | - |
| FJV42_RS10390 | 2075262..2075453 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FJV42_RS10395 | 2075551..2075790 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FJV42_RS10400 | 2075906..2077339 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T127549 NZ_CP041082:2072762-2072864 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT127549 NZ_CP041082:c2072871-2072726 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
