Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2820490..2820633 | Replicon | chromosome |
| Accession | NZ_CP041051 | ||
| Organism | Citrobacter sp. CF971 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2820495..2820598 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2820490..2820633 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| E6P06_RS17035 | 2817680..2819068 | + | 1389 | WP_199996021.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| E6P06_RS17040 | 2819169..2819405 | + | 237 | WP_029139506.1 | DUF1480 family protein | - |
| E6P06_RS17045 | 2819508..2819699 | + | 192 | WP_003034941.1 | YebW family protein | - |
| E6P06_RS17050 | 2819700..2820341 | - | 642 | WP_003034937.1 | protein-serine/threonine phosphatase | - |
| - | 2820490..2820633 | + | 144 | - | - | Antitoxin |
| - | 2820495..2820598 | - | 104 | - | - | Toxin |
| E6P06_RS17055 | 2820754..2821092 | - | 339 | WP_003034934.1 | YebY family protein | - |
| E6P06_RS17060 | 2821113..2821985 | - | 873 | WP_003844135.1 | copper homeostasis membrane protein CopD | - |
| E6P06_RS17065 | 2821989..2822363 | - | 375 | WP_003844136.1 | CopC domain-containing protein YobA | - |
| E6P06_RS17075 | 2822989..2823576 | + | 588 | WP_106107223.1 | hypothetical protein | - |
| E6P06_RS17080 | 2824069..2824260 | + | 192 | WP_008322661.1 | hypothetical protein | - |
| E6P06_RS17090 | 2824580..2825482 | + | 903 | WP_003844140.1 | diguanylate cyclase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2806489..2875477 | 68988 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127519 NZ_CP041051:c2820598-2820495 [Citrobacter sp. CF971]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT127519 NZ_CP041051:2820490-2820633 [Citrobacter sp. CF971]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
