Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pemIK/PRK09812-MazE
Location 2442759..2443339 Replicon chromosome
Accession NZ_CP041046
Organism Luteibacter pinisoli strain MAH-14

Toxin (Protein)


Gene name pemK Uniprot ID -
Locus tag FIV34_RS11075 Protein ID WP_139982677.1
Coordinates 2443016..2443339 (+) Length 108 a.a.

Antitoxin (Protein)


Gene name pemI Uniprot ID -
Locus tag FIV34_RS11070 Protein ID WP_139982675.1
Coordinates 2442759..2443016 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FIV34_RS11060 2438887..2441373 + 2487 WP_139982671.1 TonB-dependent receptor -
FIV34_RS11065 2441384..2442640 + 1257 WP_170207588.1 hypothetical protein -
FIV34_RS11070 2442759..2443016 + 258 WP_139982675.1 antitoxin Antitoxin
FIV34_RS11075 2443016..2443339 + 324 WP_139982677.1 type II toxin-antitoxin system PemK/MazF family toxin Toxin
FIV34_RS11080 2443352..2444770 - 1419 WP_139982679.1 sugar porter family MFS transporter -
FIV34_RS11085 2444879..2446918 - 2040 WP_211352628.1 catalase -
FIV34_RS11090 2447021..2447389 - 369 WP_139982684.1 hypothetical protein -
FIV34_RS11095 2447527..2447754 - 228 WP_139982686.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(1-106)

Antitoxin

Antitoxin PemI-like

(4-84)


Sequences

Toxin        


Download         Length: 108 a.a.        Molecular weight: 11511.37 Da        Isoelectric Point: 10.2088

>T127505 WP_139982677.1 NZ_CP041046:2443016-2443339 [Luteibacter pinisoli]
MRRGDIYMVGLDPVAGHEQSGFRPVMVLSPAPFNELSKTPIVLPITNGGTFSRMAGFAVALAGTRTSGVVRCDQPRALDF
AARKNAFVEQAPQAVIDDVLARLRTLI

Download         Length: 324 bp

>T127505 NZ_CP041046:2443016-2443339 [Luteibacter pinisoli]
ATGCGGCGAGGCGACATTTACATGGTGGGCCTGGACCCAGTCGCAGGCCATGAACAGTCCGGCTTTCGGCCGGTGATGGT
GCTCTCACCCGCGCCGTTCAACGAGCTCAGCAAGACACCCATCGTACTTCCGATCACCAACGGTGGGACCTTTTCACGTA
TGGCCGGCTTCGCTGTCGCGTTGGCCGGCACCAGGACGTCGGGGGTCGTGCGCTGCGACCAGCCTCGCGCGCTGGATTTC
GCCGCGAGAAAGAATGCCTTCGTCGAACAAGCCCCACAGGCGGTGATCGACGATGTTCTGGCGCGGCTGCGAACGCTTAT
CTGA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9029.35 Da        Isoelectric Point: 4.3981

>AT127505 WP_139982675.1 NZ_CP041046:2442759-2443016 [Luteibacter pinisoli]
MYKTSIRKVGGSLMLAIPPVLLEILHLTAGTQVGIDIDGGKLVVTATRAPEYSLDQLLAQCHPEQPLSEDDQTWTGGTAA
GNELI

Download         Length: 258 bp

>AT127505 NZ_CP041046:2442759-2443016 [Luteibacter pinisoli]
ATGTACAAGACCAGCATCCGGAAGGTGGGTGGCTCGCTCATGCTAGCCATTCCACCTGTCTTGCTTGAGATTCTGCACCT
CACTGCCGGTACCCAGGTCGGTATCGACATCGACGGTGGAAAGCTTGTGGTCACCGCCACCCGCGCGCCCGAATATTCTC
TCGATCAGCTACTCGCACAGTGCCATCCAGAGCAGCCGCTATCCGAGGATGACCAGACCTGGACAGGTGGTACCGCTGCC
GGCAATGAGCTCATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References