Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN-MazE
Location 677999..678633 Replicon chromosome
Accession NZ_CP041046
Organism Luteibacter pinisoli strain MAH-14

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag FIV34_RS03065 Protein ID WP_139979561.1
Coordinates 677999..678403 (-) Length 135 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID -
Locus tag FIV34_RS03070 Protein ID WP_139979563.1
Coordinates 678403..678633 (-) Length 77 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FIV34_RS03030 673204..673893 - 690 WP_139979551.1 hypothetical protein -
FIV34_RS03040 674342..674641 + 300 WP_139979553.1 helix-turn-helix domain-containing protein -
FIV34_RS03045 674987..675775 + 789 WP_211352699.1 alpha/beta hydrolase -
FIV34_RS03050 675785..676051 - 267 WP_139979555.1 hypothetical protein -
FIV34_RS03055 676814..677275 + 462 WP_139979557.1 YccF domain-containing protein -
FIV34_RS03060 677401..678018 + 618 WP_139979559.1 hypothetical protein -
FIV34_RS03065 677999..678403 - 405 WP_139979561.1 PIN domain-containing protein Toxin
FIV34_RS03070 678403..678633 - 231 WP_139979563.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Antitoxin
FIV34_RS03075 678829..679014 + 186 WP_139979565.1 hypothetical protein -
FIV34_RS03080 679052..679981 - 930 WP_139979567.1 hypothetical protein -
FIV34_RS03085 680169..682418 - 2250 WP_139979569.1 catalase/peroxidase HPI -
FIV34_RS03090 682611..683447 + 837 WP_211352700.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(6-116)

Antitoxin

SpoVT-AbrB domain

(5-38)


Sequences

Toxin        


Download         Length: 135 a.a.        Molecular weight: 15053.19 Da        Isoelectric Point: 6.4861

>T127504 WP_139979561.1 NZ_CP041046:c678403-677999 [Luteibacter pinisoli]
MEERALLDSGVILQLLSSDRAKRDRVEALLARRPFVSVQTLNEVANICRNRARMSWEDIDAFLAGVRHFCPIAGLTEHMH
DTARRLAGRYQLSIYDATIIATAIDAGATLVWSEDMHHGLVVEHSVSVINPFRD

Download         Length: 405 bp

>T127504 NZ_CP041046:c678403-677999 [Luteibacter pinisoli]
ATGGAAGAGCGCGCCCTTCTCGACAGCGGTGTGATTCTTCAGCTTCTTTCGTCCGACCGTGCGAAACGCGATCGCGTAGA
AGCGCTGCTCGCCCGTCGACCGTTCGTCAGCGTGCAAACGCTTAATGAAGTCGCCAACATCTGCCGGAACAGAGCCCGCA
TGTCGTGGGAAGACATCGATGCATTCCTCGCAGGTGTCCGACACTTCTGCCCGATCGCCGGACTAACCGAGCACATGCAC
GACACAGCAAGACGACTGGCCGGCCGCTATCAACTATCGATCTACGATGCGACGATCATCGCTACCGCGATAGACGCTGG
TGCAACACTGGTCTGGTCTGAAGACATGCACCACGGGCTGGTCGTCGAGCACAGCGTCAGTGTGATTAATCCGTTTCGCG
ATTGA

Antitoxin


Download         Length: 77 a.a.        Molecular weight: 8666.83 Da        Isoelectric Point: 6.3592

>AT127504 WP_139979563.1 NZ_CP041046:c678633-678403 [Luteibacter pinisoli]
MRVSKWGNSLGIRLPAAVVEALDLKDGDDVVLYPKGDRAFAVERRARDEEVLQRLRALGDRLPADFRFEREEANAR

Download         Length: 231 bp

>AT127504 NZ_CP041046:c678633-678403 [Luteibacter pinisoli]
ATGCGAGTTTCGAAGTGGGGCAACAGCCTGGGCATCCGCCTCCCGGCTGCCGTCGTCGAAGCGCTGGATCTGAAGGACGG
CGACGACGTCGTGCTTTATCCGAAAGGCGACCGTGCCTTCGCCGTCGAGCGCCGTGCGCGCGATGAAGAAGTGCTGCAGC
GCTTGCGAGCACTCGGCGACCGTCTGCCCGCGGACTTCCGCTTTGAGCGTGAGGAAGCGAACGCACGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References