Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2094052..2094323 | Replicon | chromosome |
| Accession | NZ_CP041031 | ||
| Organism | Escherichia coli strain PT109 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2094182..2094285 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2094052..2094323 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIR93_RS10010 | 2090607..2091269 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FIR93_RS10015 | 2091293..2091949 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FIR93_RS10020 | 2092051..2092281 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FIR93_RS10025 | 2092420..2092794 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FIR93_RS10030 | 2092798..2093670 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FIR93_RS10035 | 2093683..2094024 | + | 342 | WP_157297535.1 | YebY family protein | - |
| - | 2094052..2094323 | - | 272 | - | - | Antitoxin |
| - | 2094182..2094285 | + | 104 | - | - | Toxin |
| FIR93_RS10040 | 2094420..2095076 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FIR93_RS10045 | 2095077..2095268 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FIR93_RS10050 | 2095373..2095609 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FIR93_RS10055 | 2095727..2097166 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127465 NZ_CP041031:2094182-2094285 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT127465 NZ_CP041031:c2094323-2094052 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
