Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /Xre(antitoxin)
Location 2179284..2180385 Replicon chromosome
Accession NZ_CP041025
Organism Paremcibacter congregatus strain ZYLT

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag FIV45_RS09880 Protein ID WP_204602361.1
Coordinates 2179627..2180385 (+) Length 253 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag FIV45_RS09875 Protein ID WP_204602359.1
Coordinates 2179284..2179640 (+) Length 119 a.a.

Genomic Context

FIV45_RS09875FIV45_RS09880FIV45_RS09860FIV45_RS18600FIV45_RS18605FIV45_RS09885FIV45_RS09890FIV45_RS09895FIV45_RS09900
Location: 2179284..2179640 (357 bp)
Type: Antitoxin
Protein ID: WP_204602359.1
Location: 2179627..2180385 (759 bp)
Type: Toxin
Protein ID: WP_204602361.1
Location: 2175542..2176141 (600 bp)
Type: Others
Protein ID: WP_099474955.1
Location: 2176815..2177483 (669 bp)
Type: Others
Protein ID: WP_204602370.1
Location: 2177901..2178404 (504 bp)
Type: Others
Protein ID: Protein_1961
Location: 2180412..2180651 (240 bp)
Type: Others
Protein ID: WP_099474959.1
Location: 2180704..2180895 (192 bp)
Type: Others
Protein ID: WP_099474960.1
Location: 2181259..2181867 (609 bp)
Type: Others
Protein ID: WP_099474961.1
Location: 2181876..2182214 (339 bp)
Type: Others
Protein ID: WP_099475022.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FIV45_RS098602175542..2176141-600WP_099474955.1hypothetical protein-
FIV45_RS186002176815..2177483-669WP_204602370.1recombinase zinc beta ribbon domain-containing protein-
FIV45_RS186052177901..2178404-504Protein_1961recombinase family protein-
FIV45_RS098752179284..2179640+357WP_204602359.1DUF2384 domain-containing proteinAntitoxin
FIV45_RS098802179627..2180385+759WP_204602361.1RES domain-containing proteinToxin
FIV45_RS098852180412..2180651-240WP_099474959.1hypothetical protein-
FIV45_RS098902180704..2180895-192WP_099474960.1hypothetical protein-
FIV45_RS098952181259..2181867-609WP_099474961.1zeta toxin family protein-
FIV45_RS099002181876..2182214-339WP_099475022.1ParD-like family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideIntegrative and Conjugative Element--2176812..2285379108567


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

RES domain

(65-215)

Antitoxin

Antitoxin Xre-like, helix-turn-helix domain

(14-63)


Sequences

Toxin        


Download         Length: 253 a.a.        Molecular weight: 28438.49 Da        Isoelectric Point: 5.4052

>T127450 WP_204602361.1 NZ_CP041025:2179627-2180385 [Paremcibacter congregatus]
VEKFNLPSIDLIKTAIVSKIRGIAWRVVESQEEIATLELVDTLEEQAILEGLLEKSKPPLPENCRDLDYLLATPFRYPPL
KWGSRFGRKHEPSLFYGSENIPTALAETAYYRVLFWTGMAEPPPSGTLKTQHTIYSTKYDCSAGLYLNKPPFEEYQDLLQ
HPQDYSGSQKLGTIMRELGVDGFQFISARCPNKGLNIALFTPYALAAKRPDEKQNWICETSEQHIMFSGQGVLFKFNVEG
FQIDGKAPLPAS

Download         Length: 759 bp

>T127450 NZ_CP041025:2179627-2180385 [Paremcibacter congregatus]
GTGGAAAAATTTAATCTTCCCTCAATAGACCTGATTAAAACGGCAATTGTTTCCAAAATTAGGGGTATCGCTTGGCGTGT
TGTGGAAAGTCAGGAAGAAATTGCCACACTGGAACTTGTTGATACGCTGGAAGAACAAGCAATTTTAGAAGGGCTTCTTG
AGAAATCCAAGCCTCCTCTCCCTGAGAACTGTCGTGATCTGGACTATTTATTAGCAACCCCCTTTCGTTATCCCCCCTTA
AAATGGGGTTCCCGATTTGGGCGCAAACATGAGCCTAGTCTTTTTTATGGCTCAGAAAATATTCCAACGGCCCTCGCAGA
AACAGCCTATTACCGGGTTTTATTCTGGACAGGGATGGCGGAACCTCCCCCGTCTGGCACACTTAAAACACAACATACGA
TTTATTCTACAAAATATGACTGTTCGGCTGGATTATATTTAAACAAGCCTCCTTTTGAAGAATATCAGGACTTGCTCCAG
CATCCTCAGGATTATAGTGGATCACAGAAACTTGGCACGATCATGAGAGAATTGGGTGTAGACGGCTTTCAATTCATCTC
CGCACGCTGCCCTAACAAGGGTTTGAATATTGCACTTTTTACCCCTTATGCACTCGCCGCAAAACGACCAGATGAAAAGC
AGAACTGGATATGTGAAACTTCTGAACAGCATATTATGTTTAGCGGACAAGGGGTTTTATTTAAATTTAACGTCGAAGGT
TTCCAAATTGACGGGAAAGCCCCCCTACCCGCCAGCTAA

Antitoxin


Download         Length: 119 a.a.        Molecular weight: 13054.13 Da        Isoelectric Point: 8.0738

>AT127450 WP_204602359.1 NZ_CP041025:2179284-2179640 [Paremcibacter congregatus]
MTALTIEETNDELVLAKAVLKTAKALGLTQEELGQILGRDRTSIARGLNPSSKAGELALYLIRCYRSLFVVVGGEAENIK
HWFTTMNHHTNGVPKEQVKNIQGLVHILEYLDAIRGKI

Download         Length: 357 bp

>AT127450 NZ_CP041025:2179284-2179640 [Paremcibacter congregatus]
TTGACGGCTCTAACTATTGAAGAAACCAACGATGAACTTGTTCTGGCAAAGGCTGTTTTAAAAACAGCCAAAGCATTGGG
TTTAACGCAGGAAGAACTCGGTCAAATATTAGGTCGGGACCGTACGTCTATTGCACGCGGTCTAAACCCTTCCAGTAAGG
CGGGAGAACTGGCCCTCTATCTTATTCGCTGTTACCGCTCTTTATTTGTTGTCGTCGGCGGAGAAGCGGAGAATATCAAA
CATTGGTTTACCACCATGAACCACCATACAAATGGTGTCCCCAAAGAACAGGTGAAGAATATTCAAGGTCTTGTCCATAT
TCTTGAATATCTGGATGCCATTCGTGGAAAAATTTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
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Antitoxin

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Source
ID
Structure
No matching records found

References