Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2039150..2039295 | Replicon | chromosome |
| Accession | NZ_CP041022 | ||
| Organism | Klebsiella pneumoniae strain KP1677 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2039186..2039288 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2039150..2039295 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FH977_RS09940 | 2034282..2036341 | + | 2060 | Protein_1911 | oligopeptidase B | - |
| FH977_RS09945 | 2036345..2037003 | - | 659 | Protein_1912 | exodeoxyribonuclease X | - |
| FH977_RS09950 | 2037082..2037312 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FH977_RS09955 | 2037425..2037799 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FH977_RS09960 | 2037803..2038672 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| FH977_RS09965 | 2038689..2039027 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 2039150..2039295 | - | 146 | - | - | Antitoxin |
| - | 2039186..2039288 | + | 103 | - | - | Toxin |
| FH977_RS09975 | 2039663..2039806 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FH977_RS09980 | 2039911..2040879 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FH977_RS09985 | 2041036..2041602 | + | 567 | WP_094935968.1 | metallophosphoesterase | - |
| FH977_RS09990 | 2041599..2041790 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FH977_RS09995 | 2041888..2042127 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FH977_RS10000 | 2042243..2043676 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T127437 NZ_CP041022:2039186-2039288 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT127437 NZ_CP041022:c2039295-2039150 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
