Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2199483..2199754 | Replicon | chromosome |
| Accession | NZ_CP041002 | ||
| Organism | Escherichia coli strain FDAARGOS_772 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2199521..2199624 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2199483..2199754 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIU16_RS11670 | 2196640..2198079 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FIU16_RS11675 | 2198197..2198433 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FIU16_RS11680 | 2198538..2198729 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FIU16_RS11685 | 2198730..2199386 | - | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| - | 2199483..2199754 | + | 272 | - | - | Antitoxin |
| - | 2199521..2199624 | - | 104 | - | - | Toxin |
| FIU16_RS11690 | 2199782..2200123 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FIU16_RS11695 | 2200136..2201008 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FIU16_RS11700 | 2201012..2201386 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FIU16_RS11705 | 2201525..2201755 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FIU16_RS11710 | 2201857..2202513 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FIU16_RS11715 | 2202537..2203199 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127362 NZ_CP041002:c2199624-2199521 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT127362 NZ_CP041002:2199483-2199754 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
