Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4477490..4477635 | Replicon | chromosome |
| Accession | NZ_CP040993 | ||
| Organism | Klebsiella pneumoniae strain FDAARGOS_775 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4477497..4477599 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4477490..4477635 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FIU12_RS22055 | 4473022..4474455 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FIU12_RS22060 | 4474571..4474810 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FIU12_RS22065 | 4474908..4475099 | + | 192 | WP_025860695.1 | YebW family protein | - |
| FIU12_RS22070 | 4475096..4475749 | - | 654 | WP_032443931.1 | protein-serine/threonine phosphatase | - |
| FIU12_RS22075 | 4475906..4476874 | + | 969 | WP_073980558.1 | DUF535 family protein | - |
| FIU12_RS27520 | 4476979..4477122 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4477490..4477635 | + | 146 | - | - | Antitoxin |
| - | 4477497..4477599 | - | 103 | - | - | Toxin |
| FIU12_RS22085 | 4477758..4478096 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FIU12_RS22090 | 4478113..4478982 | - | 870 | WP_025860697.1 | copper homeostasis membrane protein CopD | - |
| FIU12_RS22095 | 4478986..4479360 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FIU12_RS22100 | 4479473..4479703 | + | 231 | WP_025860700.1 | DNA polymerase III subunit theta | - |
| FIU12_RS22105 | 4479782..4480441 | + | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| FIU12_RS22110 | 4480445..4482505 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T127327 NZ_CP040993:c4477599-4477497 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT127327 NZ_CP040993:4477490-4477635 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
