Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986641..1986912 | Replicon | chromosome |
| Accession | NZ_CP040927 | ||
| Organism | Escherichia coli strain YY76-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1986771..1986874 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986641..1986912 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FH040_RS09680 | 1983196..1983858 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FH040_RS09685 | 1983882..1984538 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein | - |
| FH040_RS09690 | 1984640..1984870 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FH040_RS09695 | 1985009..1985383 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FH040_RS09700 | 1985387..1986259 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| FH040_RS09705 | 1986272..1986613 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1986641..1986912 | - | 272 | - | - | Antitoxin |
| - | 1986771..1986874 | + | 104 | - | - | Toxin |
| FH040_RS09710 | 1987009..1987665 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FH040_RS09715 | 1987666..1987857 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FH040_RS09720 | 1987962..1988198 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FH040_RS09725 | 1988316..1989755 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127281 NZ_CP040927:1986771-1986874 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT127281 NZ_CP040927:c1986912-1986641 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ATGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
