Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2094618..2094889 | Replicon | chromosome |
| Accession | NZ_CP040919 | ||
| Organism | Escherichia coli strain FC853_EC | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2094748..2094851 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2094618..2094889 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FH485_RS10170 | 2091173..2091835 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FH485_RS10175 | 2091859..2092515 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein | - |
| FH485_RS10180 | 2092617..2092847 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FH485_RS10185 | 2092986..2093360 | + | 375 | WP_022645803.1 | CopC domain-containing protein YobA | - |
| FH485_RS10190 | 2093364..2094236 | + | 873 | WP_022645802.1 | copper homeostasis membrane protein CopD | - |
| FH485_RS10195 | 2094249..2094590 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2094618..2094889 | - | 272 | - | - | Antitoxin |
| - | 2094748..2094851 | + | 104 | - | - | Toxin |
| FH485_RS10200 | 2094986..2095642 | + | 657 | WP_022645801.1 | protein-serine/threonine phosphatase | - |
| FH485_RS10205 | 2095643..2095834 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FH485_RS10210 | 2095939..2096175 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FH485_RS10215 | 2096293..2097732 | - | 1440 | WP_024181822.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127234 NZ_CP040919:2094748-2094851 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT127234 NZ_CP040919:c2094889-2094618 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
