Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4869444..4869589 | Replicon | chromosome |
| Accession | NZ_CP040861 | ||
| Organism | Klebsiella pneumoniae strain Xen39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4869480..4869582 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4869444..4869589 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEE38_RS24765 | 4864574..4866634 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FEE38_RS24770 | 4866638..4867297 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FEE38_RS24775 | 4867376..4867606 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FEE38_RS24780 | 4867719..4868093 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FEE38_RS24785 | 4868097..4868966 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| FEE38_RS24790 | 4868983..4869321 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4869444..4869589 | - | 146 | - | - | Antitoxin |
| - | 4869480..4869582 | + | 103 | - | - | Toxin |
| FEE38_RS24795 | 4869957..4870100 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FEE38_RS24800 | 4870205..4871173 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| FEE38_RS24805 | 4871330..4871983 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| FEE38_RS24810 | 4871980..4872171 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FEE38_RS24815 | 4872269..4872508 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FEE38_RS24820 | 4872624..4874057 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T127119 NZ_CP040861:4869480-4869582 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT127119 NZ_CP040861:c4869589-4869444 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
