Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 908711..908793 | Replicon | chromosome |
| Accession | NZ_CP040817 | ||
| Organism | Dickeya zeae strain PL65 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 908711..908791 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 908711..908793 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGI21_RS03995 (FGI21_03995) | 904171..906105 | + | 1935 | WP_012884836.1 | protein kinase YeaG | - |
| FGI21_RS04000 (FGI21_04000) | 906142..907419 | + | 1278 | WP_033581676.1 | YeaH/YhbH family protein | - |
| FGI21_RS04005 (FGI21_04005) | 907512..907907 | - | 396 | WP_102801720.1 | hypothetical protein | - |
| FGI21_RS04010 (FGI21_04010) | 908203..908541 | + | 339 | WP_168362556.1 | YebY family protein | - |
| - | 908711..908791 | + | 81 | - | - | Toxin |
| - | 908711..908793 | - | 83 | - | - | Antitoxin |
| FGI21_RS04015 (FGI21_04015) | 908944..909171 | + | 228 | WP_168362557.1 | hypothetical protein | - |
| FGI21_RS04020 (FGI21_04020) | 909442..910194 | - | 753 | WP_038914011.1 | IclR family transcriptional regulator | - |
| FGI21_RS04025 (FGI21_04025) | 910598..910990 | + | 393 | WP_016941272.1 | RidA family protein | - |
| FGI21_RS04030 (FGI21_04030) | 911129..911965 | + | 837 | WP_168362558.1 | transporter substrate-binding domain-containing protein | - |
| FGI21_RS04035 (FGI21_04035) | 912015..912755 | + | 741 | WP_219953305.1 | amino acid ABC transporter permease | - |
| FGI21_RS04040 (FGI21_04040) | 912752..913396 | + | 645 | WP_168362560.1 | amino acid ABC transporter permease | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 81 bp
>T127047 NZ_CP040817:908711-908791 [Dickeya zeae]
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
AATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGGGCACAGGAATCGTGTTCGGTCTTTTTT
T
Antitoxin
Download Length: 83 bp
>AT127047 NZ_CP040817:c908793-908711 [Dickeya zeae]
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
ATAAAAAAAGACCGAACACGATTCCTGTGCCCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATT
