Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2525131..2525399 | Replicon | chromosome |
| Accession | NZ_CP040805 | ||
| Organism | Escherichia fergusonii strain EFCF056 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2525169..2525272 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2525131..2525399 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D8Z79_RS12385 | 2522288..2523727 | + | 1440 | WP_125400149.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| D8Z79_RS12390 | 2523846..2524082 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| D8Z79_RS12395 | 2524187..2524378 | + | 192 | WP_001296140.1 | YebW family protein | - |
| D8Z79_RS12400 | 2524379..2525035 | - | 657 | WP_125400147.1 | protein-serine/threonine phosphatase | - |
| - | 2525131..2525399 | + | 269 | - | - | Antitoxin |
| - | 2525169..2525272 | - | 104 | - | - | Toxin |
| D8Z79_RS12405 | 2525429..2525770 | - | 342 | WP_000976176.1 | YebY family protein | - |
| D8Z79_RS12410 | 2525782..2526654 | - | 873 | WP_125400145.1 | copper homeostasis membrane protein CopD | - |
| D8Z79_RS12415 | 2526657..2527031 | - | 375 | WP_000168725.1 | CopC domain-containing protein YobA | - |
| D8Z79_RS12420 | 2527170..2527400 | + | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| D8Z79_RS12425 | 2527507..2528163 | + | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| D8Z79_RS12430 | 2528187..2528849 | + | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2519575..2547923 | 28348 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T127002 NZ_CP040805:c2525272-2525169 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT127002 NZ_CP040805:2525131-2525399 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
