Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3852350..3852495 | Replicon | chromosome |
| Accession | NZ_CP040711 | ||
| Organism | Klebsiella pneumoniae strain 16HN-35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3852357..3852459 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3852350..3852495 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGL96_RS18965 (FGL96_19030) | 3847882..3849315 | + | 1434 | WP_101345779.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FGL96_RS18970 (FGL96_19035) | 3849431..3849670 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FGL96_RS18975 (FGL96_19040) | 3849768..3849959 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FGL96_RS18980 (FGL96_19045) | 3849956..3850609 | - | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| FGL96_RS18985 (FGL96_19050) | 3850766..3851734 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FGL96_RS18990 | 3851839..3851982 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3852350..3852495 | + | 146 | - | - | Antitoxin |
| - | 3852357..3852459 | - | 103 | - | - | Toxin |
| FGL96_RS18995 (FGL96_19060) | 3852618..3852956 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FGL96_RS19000 (FGL96_19065) | 3852973..3853842 | - | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| FGL96_RS19005 (FGL96_19070) | 3853846..3854220 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FGL96_RS19010 (FGL96_19075) | 3854333..3854563 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FGL96_RS19015 (FGL96_19080) | 3854642..3855301 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FGL96_RS19020 (FGL96_19085) | 3855305..3857365 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T126875 NZ_CP040711:c3852459-3852357 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT126875 NZ_CP040711:3852350-3852495 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
