Detailed information of TA system TA126720

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 2848730..2849370
• Replicon: chromosome
• Accession: NZ_CP040691
• Organism: Mycobacterium tuberculosis complex sp. N0155

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ08
• Locus tag: FF955_RS13350
• Protein ID: WP_003412970.1
• Coordinates: 2848730..2849149 (-)
• Length: 140 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TQ09
• Locus tag: FF955_RS13355
• Protein ID: WP_003412975.1
• Coordinates: 2849146..2849370 (-)
• Length: 75 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FF955_RS13320 (FF955_13795)	2844320..2845042	-	723	WP_003412957.1	DUF1906 domain-containing protein	-
FF955_RS13325 (FF955_13805)	2845559..2845781	+	223	Protein_2630	type II toxin-antitoxin system VapB family antitoxin	-
FF955_RS13330 (FF955_13810)	2845778..2846179	+	402	WP_003412963.1	PIN domain-containing protein	-
FF955_RS13335 (FF955_13815)	2846214..2847134	-	921	WP_003412965.1	restriction endonuclease	-
FF955_RS13340	2847475..2847720	-	246	WP_071854223.1	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	-
FF955_RS13345 (FF955_13820)	2847779..2848729	+	951	WP_003911916.1	ERCC4 domain-containing protein	-
FF955_RS13350 (FF955_13825)	2848730..2849149	-	420	WP_003412970.1	type II toxin-antitoxin system VapC family toxin	Toxin
FF955_RS13355 (FF955_13830)	2849146..2849370	-	225	WP_003412975.1	antitoxin VapB39	Antitoxin
FF955_RS13360 (FF955_13835)	2849401..2852244	-	2844	WP_003899363.1	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	-
FF955_RS13365 (FF955_13840)	2852316..2852717	-	402	WP_003412981.1	hypothetical protein	-
FF955_RS13370 (FF955_13845)	2852717..2853187	-	471	WP_003899364.1	transcription antitermination factor NusB	-
FF955_RS13375 (FF955_13850)	2853190..2853753	-	564	WP_003412989.1	elongation factor P	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (4-128)

Antitoxin

No domain identified.

Sequences

Toxin

Protein

• Length: 140 a.a.
• Molecular weight: 14732.70 Da
• Isoelectric Point: 6.7519

>T126720 WP_003412970.1 NZ_CP040691:c2849149-2848730 [Mycobacterium tuberculosis complex sp. N0155]
VTALLDVNVLIALGWPNHVHHAAAQRWFTQFSSNGWATTPITEAGYVRISSNRSVMQVSTTPAIAIAQLAAMTSLAGHTF
WPDDVPLIVGSAGDRDAVSNHRRVTDCHLIALAARYGGRLVTFDAALADSASAGLVEVL

Nucleotide

• Length: 420 bp

>T126720 NZ_CP040691:c2849149-2848730 [Mycobacterium tuberculosis complex sp. N0155]
GTGACGGCACTGCTCGATGTCAATGTGCTGATCGCGCTGGGCTGGCCGAATCACGTTCACCATGCGGCCGCGCAGCGATG
GTTCACGCAGTTCTCCTCGAATGGGTGGGCCACCACGCCGATCACCGAGGCAGGGTATGTCCGAATTTCAAGCAATCGCA
GTGTGATGCAGGTGTCGACCACGCCGGCTATCGCGATCGCTCAGTTGGCGGCGATGACTTCTCTTGCCGGGCACACGTTT
TGGCCTGACGATGTGCCACTGATCGTTGGGAGCGCCGGCGATCGCGATGCGGTGTCCAACCACCGTCGGGTCACCGACTG
CCATCTCATCGCCTTGGCCGCGCGCTACGGGGGCCGGTTGGTCACATTCGATGCCGCACTGGCCGATTCAGCATCCGCAG
GCCTCGTCGAGGTGTTGTAG

Antitoxin

Protein

• Length: 75 a.a.
• Molecular weight: 7993.94 Da
• Isoelectric Point: 4.0057

>AT126720 WP_003412975.1 NZ_CP040691:c2849370-2849146 [Mycobacterium tuberculosis complex sp. N0155]
MRTTLQIDDDVLEDARSIARSEGKSVGAVISELARRSLRPVGIVEVDGFPVFDVPPDAPTVTSEDVVRALEDDV

Nucleotide

• Length: 225 bp

>AT126720 NZ_CP040691:c2849370-2849146 [Mycobacterium tuberculosis complex sp. N0155]
ATGCGCACCACGTTGCAGATTGATGATGATGTTCTAGAAGATGCTCGTAGCATCGCGCGGTCGGAGGGCAAGTCAGTCGG
CGCGGTAATTTCTGAGTTGGCGCGTAGGTCGCTCCGTCCGGTTGGGATTGTCGAGGTTGACGGATTTCCGGTTTTTGATG
TTCCGCCGGATGCGCCGACGGTGACTTCCGAGGATGTCGTCCGCGCGCTCGAGGACGACGTGTGA

Structures

Toxin

• AlphaFold DB: G0TQ08

Antitoxin

• AlphaFold DB: G0TQ09