Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) relBE/RelE-Phd
Location 3185214..3185762 Replicon chromosome
Accession NZ_CP040689
Organism Mycobacterium tuberculosis complex sp. N0072

Toxin (Protein)


Gene name relE Uniprot ID G0TFG5
Locus tag FF952_RS15140 Protein ID WP_003414602.1
Coordinates 3185499..3185762 (+) Length 88 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID O33347
Locus tag FF952_RS15135 Protein ID WP_003414599.1
Coordinates 3185214..3185495 (+) Length 94 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FF952_RS15110 (FF952_15630) 3180837..3181694 - 858 WP_003899513.1 type I methionyl aminopeptidase -
FF952_RS15115 (FF952_15635) 3181736..3182320 - 585 WP_003414585.1 DUF1707 domain-containing protein -
FF952_RS15120 (FF952_15640) 3182424..3182672 + 249 WP_003913411.1 antitoxin VapB23 -
FF952_RS15125 (FF952_15645) 3182669..3183049 + 381 WP_003414592.1 type II toxin-antitoxin system VapC family toxin -
FF952_RS15130 (FF952_15650) 3183131..3184942 - 1812 WP_003414596.1 penicillin-binding protein -
FF952_RS15135 (FF952_15655) 3185214..3185495 + 282 WP_003414599.1 type II toxin-antitoxin system antitoxin RelF Antitoxin
FF952_RS15140 (FF952_15660) 3185499..3185762 + 264 WP_003414602.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FF952_RS15145 (FF952_15665) 3186135..3186989 - 855 WP_003899516.1 GNAT family N-acetyltransferase -
FF952_RS15150 (FF952_15670) 3187045..3188208 - 1164 WP_003899517.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
FF952_RS15155 (FF952_15675) 3188225..3189439 - 1215 WP_003414610.1 zinc metalloprotease Rip -
FF952_RS15160 (FF952_15680) 3189447..3190688 - 1242 WP_003414613.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 88 a.a.        Molecular weight: 10204.82 Da        Isoelectric Point: 11.5078

>T126611 WP_003414602.1 NZ_CP040689:3185499-3185762 [Mycobacterium tuberculosis complex sp. N0072]
VPYTVRFTTTARRDLHKLPPRILAAVVEFAFGDLSREPLRVGKPLRRELAGTFSARRGTYRLLYRIDDEHTTVVILRVDH
RADIYRR

Download         Length: 264 bp

>T126611 NZ_CP040689:3185499-3185762 [Mycobacterium tuberculosis complex sp. N0072]
GTGCCTTACACCGTGCGGTTCACCACAACCGCGCGTCGAGACCTCCACAAGCTGCCACCGCGAATCCTCGCGGCAGTGGT
CGAATTCGCGTTCGGCGATCTGTCGCGCGAGCCCCTGCGGGTGGGCAAGCCCCTTCGGCGCGAGTTGGCCGGCACGTTCA
GCGCGCGTCGCGGAACGTACCGCCTGCTGTACCGGATTGACGACGAGCACACAACGGTAGTGATCCTGCGCGTCGATCAC
CGCGCGGACATCTACCGCCGATAG

Antitoxin


Download         Length: 94 a.a.        Molecular weight: 10183.40 Da        Isoelectric Point: 4.3440

>AT126611 WP_003414599.1 NZ_CP040689:3185214-3185495 [Mycobacterium tuberculosis complex sp. N0072]
MRILPISTIKGKLNEFVDAVSSTQDQITITKNGAPAAVLVGADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGED
EIRAEFGVPRRPH

Download         Length: 282 bp

>AT126611 NZ_CP040689:3185214-3185495 [Mycobacterium tuberculosis complex sp. N0072]
ATGCGGATACTGCCGATTTCGACGATCAAGGGCAAGCTCAATGAGTTCGTCGACGCGGTCTCGTCGACACAGGACCAGAT
CACCATCACCAAGAACGGTGCACCCGCAGCCGTTCTGGTCGGCGCCGACGAGTGGGAATCGTTGCAGGAGACGCTGTACT
GGCTGGCGCAACCCGGAATCAGGGAGTCGATCGCTGAAGCCGACGCCGACATTGCCTCCGGCCGCACCTACGGCGAAGAC
GAGATCCGCGCCGAATTCGGCGTCCCGCGACGCCCCCACTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 3G5O


Antitoxin

Source ID Structure
PDB 3G5O
AlphaFold DB A0A7U4BWP8

References