Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/Txe-YefM |
| Location | 3764367..3764896 | Replicon | chromosome |
| Accession | NZ_CP040688 | ||
| Organism | Mycobacterium tuberculosis complex sp. N0052 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | G0TI95 |
| Locus tag | FF951_RS17730 | Protein ID | WP_003417760.1 |
| Coordinates | 3764639..3764896 (+) | Length | 86 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | G0TI94 |
| Locus tag | FF951_RS17725 | Protein ID | WP_003417757.1 |
| Coordinates | 3764367..3764642 (+) | Length | 92 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FF951_RS17690 (FF951_18325) | 3760940..3761629 | - | 690 | WP_003917774.1 | BBE domain-containing protein | - |
| FF951_RS17695 (FF951_18330) | 3761816..3762187 | - | 372 | WP_003417739.1 | FAD-binding protein | - |
| FF951_RS17700 | 3762085..3762303 | - | 219 | WP_157132559.1 | hypothetical protein | - |
| FF951_RS17705 (FF951_18340) | 3762330..3762590 | - | 261 | WP_003417741.1 | hypothetical protein | - |
| FF951_RS17710 (FF951_18345) | 3762705..3763094 | + | 390 | WP_003417745.1 | DUF732 domain-containing protein | - |
| FF951_RS17715 (FF951_18350) | 3763108..3763401 | - | 294 | WP_003417749.1 | DUF3017 domain-containing protein | - |
| FF951_RS17720 (FF951_18355) | 3763398..3764243 | - | 846 | WP_003417751.1 | bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase | - |
| FF951_RS17725 (FF951_18360) | 3764367..3764642 | + | 276 | WP_003417757.1 | type II toxin-antitoxin system antitoxin RelJ | Antitoxin |
| FF951_RS17730 (FF951_18365) | 3764639..3764896 | + | 258 | WP_003417760.1 | Txe/YoeB family addiction module toxin | Toxin |
| FF951_RS17735 (FF951_18370) | 3764938..3766128 | + | 1191 | WP_003900033.1 | NADH:flavin oxidoreductase | - |
| FF951_RS17740 (FF951_18375) | 3766245..3766613 | + | 369 | WP_003417765.1 | FHA domain-containing protein | - |
| FF951_RS17745 (FF951_18380) | 3766610..3767161 | - | 552 | WP_003417767.1 | pentapeptide repeat protein MfpA | - |
| FF951_RS17750 (FF951_18385) | 3767168..3767749 | - | 582 | WP_003417769.1 | ATP/GTP-binding protein | - |
| FF951_RS17755 (FF951_18390) | 3767730..3768098 | - | 369 | WP_003417772.1 | DUF742 domain-containing protein | - |
| FF951_RS17760 (FF951_18395) | 3768076..3768468 | - | 393 | WP_003417776.1 | serine protease inhibitor | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 86 a.a. Molecular weight: 10070.30 Da Isoelectric Point: 6.4693
>T126555 WP_003417760.1 NZ_CP040688:3764639-3764896 [Mycobacterium tuberculosis complex sp. N0052]
VRSVNFDPDAWEDFLFWLAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAGDDEVTMLK
ARYHY
VRSVNFDPDAWEDFLFWLAADRKTARRITRLIGEIQRDPFSGIGKPEPLQGELSGYWSRRIDDEHRLVYRAGDDEVTMLK
ARYHY
Download Length: 258 bp
>T126555 NZ_CP040688:3764639-3764896 [Mycobacterium tuberculosis complex sp. N0052]
GTGAGAAGCGTCAACTTCGATCCCGATGCCTGGGAGGACTTCTTGTTCTGGCTGGCCGCTGATCGCAAAACGGCCCGTCG
GATCACCCGGTTGATCGGAGAAATTCAGCGTGATCCGTTCAGCGGGATCGGCAAACCCGAGCCGCTCCAAGGTGAGTTGT
CGGGATACTGGTCGCGCCGGATCGACGACGAACACCGGCTGGTGTATCGAGCGGGCGACGACGAAGTCACGATGCTGAAG
GCCCGATACCACTACTGA
GTGAGAAGCGTCAACTTCGATCCCGATGCCTGGGAGGACTTCTTGTTCTGGCTGGCCGCTGATCGCAAAACGGCCCGTCG
GATCACCCGGTTGATCGGAGAAATTCAGCGTGATCCGTTCAGCGGGATCGGCAAACCCGAGCCGCTCCAAGGTGAGTTGT
CGGGATACTGGTCGCGCCGGATCGACGACGAACACCGGCTGGTGTATCGAGCGGGCGACGACGAAGTCACGATGCTGAAG
GCCCGATACCACTACTGA
Antitoxin
Download Length: 92 a.a. Molecular weight: 10194.35 Da Isoelectric Point: 4.6652
>AT126555 WP_003417757.1 NZ_CP040688:3764367-3764642 [Mycobacterium tuberculosis complex sp. N0052]
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSV
DELREMAGGEE
MSISASEARQRLFPLIEQVNTDHQPVRITSRAGDAVLMSADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSV
DELREMAGGEE
Download Length: 276 bp
>AT126555 NZ_CP040688:3764367-3764642 [Mycobacterium tuberculosis complex sp. N0052]
ATGAGCATCAGTGCGAGCGAGGCGAGGCAGCGCCTGTTTCCACTCATCGAACAGGTCAATACCGATCACCAGCCGGTGCG
GATCACCTCCCGGGCCGGCGATGCGGTGCTGATGTCCGCCGACGACTACGACGCGTGGCAGGAAACGGTCTATCTGCTGC
GCTCACCGGAGAACGCCAGGCGGTTGATGGAAGCGGTTGCCCGGGATAAGGCTGGGCACTCGGCTTTCACCAAGTCTGTA
GATGAGCTGCGGGAGATGGCCGGCGGCGAGGAGTGA
ATGAGCATCAGTGCGAGCGAGGCGAGGCAGCGCCTGTTTCCACTCATCGAACAGGTCAATACCGATCACCAGCCGGTGCG
GATCACCTCCCGGGCCGGCGATGCGGTGCTGATGTCCGCCGACGACTACGACGCGTGGCAGGAAACGGTCTATCTGCTGC
GCTCACCGGAGAACGCCAGGCGGTTGATGGAAGCGGTTGCCCGGGATAAGGCTGGGCACTCGGCTTTCACCAAGTCTGTA
GATGAGCTGCGGGAGATGGCCGGCGGCGAGGAGTGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|