Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/PIN_Sll0205-like-Phd
Location 3117283..3117887 Replicon chromosome
Accession NZ_CP040688
Organism Mycobacterium tuberculosis complex sp. N0052

Toxin (Protein)


Gene name vapC Uniprot ID P71623
Locus tag FF951_RS14900 Protein ID WP_003414492.1
Coordinates 3117283..3117675 (-) Length 131 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A829CBY8
Locus tag FF951_RS14905 Protein ID WP_003414495.1
Coordinates 3117672..3117887 (-) Length 72 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FF951_RS14870 (FF951_15360) 3112433..3113221 - 789 WP_003917092.1 CRISPR-associated endoribonuclease Cas6 -
FF951_RS14875 (FF951_15365) 3113555..3114100 - 546 WP_014584866.1 DUF1802 family protein -
FF951_RS14880 (FF951_15370) 3114372..3115256 - 885 WP_003414409.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
FF951_RS14885 (FF951_15375) 3115259..3116146 - 888 WP_003414414.1 type IV toxin-antitoxin system AbiEi family antitoxin -
FF951_RS14890 (FF951_15380) 3116451..3116996 - 546 WP_003899500.1 DUF1802 family protein -
FF951_RS14895 (FF951_15385) 3116993..3117262 - 270 WP_003414489.1 DUF2277 family protein -
FF951_RS14900 (FF951_15390) 3117283..3117675 - 393 WP_003414492.1 type II toxin-antitoxin system VapC family toxin Toxin
FF951_RS14905 (FF951_15395) 3117672..3117887 - 216 WP_003414495.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
FF951_RS14910 (FF951_15400) 3117934..3118683 + 750 WP_003902358.1 enoyl-CoA hydratase -
FF951_RS14915 (FF951_15405) 3118762..3119844 - 1083 WP_003414499.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
FF951_RS14920 (FF951_15410) 3119837..3121147 - 1311 WP_003414501.1 ABC transporter substrate-binding protein -
FF951_RS14925 (FF951_15415) 3121150..3121977 - 828 WP_003414504.1 carbohydrate ABC transporter permease -
FF951_RS14930 (FF951_15420) 3121974..3122885 - 912 WP_003902360.1 sugar ABC transporter permease -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 131 a.a.        Molecular weight: 14610.74 Da        Isoelectric Point: 6.7594

>T126550 WP_003414492.1 NZ_CP040688:c3117675-3117283 [Mycobacterium tuberculosis complex sp. N0052]
MTTVLLDSHVAYWWSAEPQRLSMAASQAIEHADELAVAAISWFELAWLAEQERIQLAIPVLSWLQQLAEHVRTVGITPSV
AATAVALPSSFPGDPADRLIYATAIEHGWRLVTKDRRLRSHRHPRPVTVW

Download         Length: 393 bp

>T126550 NZ_CP040688:c3117675-3117283 [Mycobacterium tuberculosis complex sp. N0052]
ATGACGACGGTGCTGCTCGACTCGCATGTGGCCTACTGGTGGTCGGCCGAGCCGCAGCGTCTCAGCATGGCGGCGAGCCA
GGCCATCGAACACGCCGACGAGCTCGCCGTCGCCGCGATTTCGTGGTTCGAGCTGGCTTGGCTTGCCGAACAGGAACGCA
TCCAACTGGCGATTCCGGTGCTGTCCTGGCTTCAGCAGCTGGCCGAGCACGTTCGCACCGTCGGTATCACGCCCTCGGTC
GCCGCCACGGCGGTGGCGCTGCCCTCGTCGTTCCCCGGCGATCCGGCCGACCGGTTGATCTACGCCACCGCGATCGAACA
CGGCTGGCGGCTGGTGACCAAGGACCGGCGGCTACGCAGTCATCGGCACCCACGACCGGTCACCGTCTGGTAG

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7511.55 Da        Isoelectric Point: 4.9732

>AT126550 WP_003414495.1 NZ_CP040688:c3117887-3117672 [Mycobacterium tuberculosis complex sp. N0052]
MTATEVKAKILSLLDEVAQGEEIEITKHGRTVARLVAATGPHALKGRFSGVAMAAVDDDELFTTGVSWNVS

Download         Length: 216 bp

>AT126550 NZ_CP040688:c3117887-3117672 [Mycobacterium tuberculosis complex sp. N0052]
ATGACCGCTACGGAGGTGAAGGCGAAGATCCTCTCCTTGCTTGATGAAGTGGCCCAGGGCGAGGAGATCGAGATCACCAA
ACACGGCCGCACCGTGGCCCGGCTGGTGGCAGCGACGGGGCCGCACGCGCTGAAGGGTCGATTCTCGGGTGTGGCGATGG
CGGCCGTGGATGACGACGAACTCTTCACCACCGGGGTTTCGTGGAACGTTTCATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A7U4BWM8


Antitoxin

Source ID Structure
AlphaFold DB A0A829CBY8

References