Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 3057088..3057767 Replicon chromosome
Accession NZ_CP040688
Organism Mycobacterium tuberculosis complex sp. N0052

Toxin (Protein)


Gene name vapC Uniprot ID P9WF90
Locus tag FF951_RS14545 Protein ID WP_003414059.1
Coordinates 3057088..3057504 (-) Length 139 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TF64
Locus tag FF951_RS14550 Protein ID WP_003414061.1
Coordinates 3057501..3057767 (-) Length 89 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FF951_RS14525 (FF951_15020) 3053140..3054042 - 903 WP_003900564.1 4-hydroxy-tetrahydrodipicolinate synthase -
FF951_RS14530 (FF951_15025) 3054111..3054863 - 753 WP_003899465.1 FAD-dependent thymidylate synthase -
FF951_RS14535 (FF951_15030) 3055107..3055382 - 276 WP_003414055.1 type I restriction endonuclease subunit S -
FF951_RS14540 (FF951_15035) 3055379..3057001 - 1623 WP_003414057.1 class I SAM-dependent DNA methyltransferase -
FF951_RS14545 (FF951_15040) 3057088..3057504 - 417 WP_003414059.1 type II toxin-antitoxin system toxin ribonuclease C21 Toxin
FF951_RS14550 (FF951_15045) 3057501..3057767 - 267 WP_003414061.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
FF951_RS14555 (FF951_15050) 3057793..3058188 - 396 WP_003414064.1 type II toxin-antitoxin system VapC family toxin -
FF951_RS14560 (FF951_15055) 3058185..3058454 - 270 WP_003414066.1 type II toxin-antitoxin system VapB family antitoxin -
FF951_RS14565 (FF951_15060) 3058464..3059558 - 1095 WP_003414068.1 restriction endonuclease subunit S -
FF951_RS14570 (FF951_15065) 3059555..3059974 - 420 WP_003414070.1 winged helix-turn-helix domain-containing protein -
FF951_RS14575 3059973..3060047 + 75 Protein_2876 hypothetical protein -
FF951_RS14580 (FF951_15070) 3060048..3060527 - 480 WP_003414073.1 dihydrofolate reductase -
FF951_RS14585 (FF951_15075) 3060598..3061398 - 801 WP_003911953.1 thymidylate synthase -
FF951_RS14590 (FF951_15080) 3061554..3062291 + 738 WP_003414079.1 dienelactone hydrolase family protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(5-123)

Antitoxin

(16-56)


Sequences


Toxin        


Download         Length: 139 a.a.        Molecular weight: 15773.00 Da        Isoelectric Point: 7.1294

>T126546 WP_003414059.1 NZ_CP040688:c3057504-3057088 [Mycobacterium tuberculosis complex sp. N0052]
MTTRYLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDALEYVNTPDTVWVRAWEI
QEALTDKGFHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIAAITRQPVEWVVAPGTA

Download         Length: 417 bp

>T126546 NZ_CP040688:c3057504-3057088 [Mycobacterium tuberculosis complex sp. N0052]
ATGACCACGCGCTATTTGCTCGACAAATCAGCGGCTTACCGCGCGCACTTGCCCGCGGTCCGACATCGCTTGGAACCGTT
GATGGAACGCGGTCTACTGGCCCGGTGCGGCATTACCGATCTCGAGTTCGGAGTCTCGGCGCGTTCCCGCGAGGACCATC
GAACACTGGGCACCTACCGGCGTGACGCGCTCGAATACGTCAACACCCCCGACACCGTGTGGGTTCGTGCATGGGAGATC
CAAGAAGCATTGACCGACAAGGGATTTCACCGCTCGGTCAAGATCCCGGACTTGATCATTGCGGCGGTCGCCGAGCATCA
CGGCATACCCGTCATGCACTACGACCAAGACTTCGAACGCATCGCCGCCATCACACGGCAACCCGTGGAATGGGTGGTGG
CCCCAGGGACAGCGTGA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 9493.77 Da        Isoelectric Point: 7.2783

>AT126546 WP_003414061.1 NZ_CP040688:c3057767-3057501 [Mycobacterium tuberculosis complex sp. N0052]
MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNAMWR
DGHPENTA

Download         Length: 267 bp

>AT126546 NZ_CP040688:c3057767-3057501 [Mycobacterium tuberculosis complex sp. N0052]
ATGCATCGCGGATATGCATTAGTAGTATGCTCTCCGGGTGTGACGCGCACCATGATCGACATCGATGACGACCTGCTCGC
TCGGGCCGCCAAGGAACTGGGTACCACGACAAAGAAAGACACCGTGCATGCCGCGCTGCGGGCCGCGTTGCGAGCCAGTG
CCGCGCGCTCGCTCATGAACCGGATGGCCGAGAACGCCACCGGAACCCAGGACGAAGCTCTGGTCAACGCAATGTGGCGA
GACGGCCACCCAGAGAACACGGCATGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
PDB 5SV2


Antitoxin

Source ID Structure
AlphaFold DB G0TF64

References