Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/AbrB(antitoxin)
Location 693103..693749 Replicon chromosome
Accession NZ_CP040688
Organism Mycobacterium tuberculosis complex sp. N0052

Toxin (Protein)


Gene name vapC Uniprot ID G0TQ88
Locus tag FF951_RS03110 Protein ID WP_003403137.1
Coordinates 693103..693516 (-) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TQ89
Locus tag FF951_RS03115 Protein ID WP_003403139.1
Coordinates 693513..693749 (-) Length 79 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FF951_RS03090 (FF951_03145) 689186..690736 + 1551 WP_003403119.1 MlaD family protein -
FF951_RS03095 (FF951_03150) 690788..691180 - 393 WP_003403122.1 type II toxin-antitoxin system toxin ribonuclease C4 -
FF951_RS03100 (FF951_03155) 691177..691434 - 258 WP_003403125.1 type II toxin-antitoxin system antitoxin VapB4 -
FF951_RS03105 (FF951_03160) 691617..692852 - 1236 WP_003403128.1 ATP-binding protein -
FF951_RS03110 (FF951_03165) 693103..693516 - 414 WP_003403137.1 type II toxin-antitoxin system VapC family toxin Toxin
FF951_RS03115 (FF951_03170) 693513..693749 - 237 WP_003403139.1 type II toxin-antitoxin system antitoxin VapB27 Antitoxin
FF951_RS03120 (FF951_03175) 693853..694359 - 507 WP_003900973.1 two component system sensor kinase HK1 -
FF951_RS03125 (FF951_03180) 694473..695003 - 531 WP_003917320.1 two component system sensor kinase HK2 -
FF951_RS03130 (FF951_03185) 694987..695682 - 696 WP_003918099.1 two-component system response regulator TcrA -
FF951_RS03135 (FF951_03190) 695805..696116 + 312 WP_003403164.1 hypothetical protein -
FF951_RS03140 (FF951_03195) 696188..697138 + 951 WP_003900184.1 DUF1259 domain-containing protein -
FF951_RS03145 (FF951_03200) 697379..697963 + 585 WP_003403171.1 IS607-like element IS1536 family transposase -
FF951_RS03150 (FF951_03205) 697965..698675 + 711 Protein_624 IS607 family element RNA-guided endonuclease TnpB -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(7-126)

Antitoxin

(3-43)


Sequences


Toxin        


Download         Length: 138 a.a.        Molecular weight: 14786.14 Da        Isoelectric Point: 8.1405

>T126505 WP_003403137.1 NZ_CP040688:c693516-693103 [Mycobacterium tuberculosis complex sp. N0052]
VKPPLAVDTSVAIPLLVRTHTAHAAVVAWWAHREAALCGHALAETYSVLTRLPRDLRLAPMDAARLLTERFAAPLLLSSR
TTEHLPRVLAQFEITGGAVYDALVALAAAEHRAELATRDARAKDTYEKIGVHVVVAA

Download         Length: 414 bp

>T126505 NZ_CP040688:c693516-693103 [Mycobacterium tuberculosis complex sp. N0052]
GTGAAACCGCCGCTGGCAGTGGACACCAGCGTCGCGATTCCGTTGCTGGTACGGACCCATACCGCGCATGCGGCGGTTGT
CGCCTGGTGGGCACATCGGGAGGCCGCGCTGTGCGGGCACGCCCTGGCCGAAACCTACTCCGTGCTGACCCGCCTGCCGC
GTGACCTACGACTGGCACCGATGGACGCCGCGCGGCTTCTTACCGAACGCTTTGCGGCACCGCTGTTGTTGAGTTCCCGC
ACCACTGAACATCTCCCACGCGTGCTGGCCCAATTCGAGATCACTGGTGGCGCGGTCTATGACGCTCTCGTGGCCCTTGC
CGCCGCCGAGCACCGGGCTGAACTCGCCACACGCGATGCTCGAGCCAAGGACACTTACGAAAAGATCGGCGTCCACGTCG
TTGTCGCCGCGTGA

Antitoxin


Download         Length: 79 a.a.        Molecular weight: 8212.41 Da        Isoelectric Point: 5.0351

>AT126505 WP_003403139.1 NZ_CP040688:c693749-693513 [Mycobacterium tuberculosis complex sp. N0052]
MKAVVDAAGRIVVPKPLREALGLQPGSTVEISRYGAGLHLIPTGRTARLEEENGVLVATGETTIDDEVVFGLIDSGRK

Download         Length: 237 bp

>AT126505 NZ_CP040688:c693749-693513 [Mycobacterium tuberculosis complex sp. N0052]
ATGAAGGCTGTTGTGGATGCGGCTGGCCGCATCGTCGTACCCAAACCGCTGCGCGAAGCCTTGGGGCTGCAACCGGGGTC
CACCGTGGAAATATCCCGCTATGGCGCTGGTCTCCACCTGATTCCCACCGGACGAACAGCGCGTCTCGAAGAGGAGAATG
GCGTACTGGTGGCCACCGGTGAGACCACGATCGACGATGAGGTCGTGTTCGGCCTTATCGATAGCGGCCGGAAGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB G0TQ88


Antitoxin

Source ID Structure
AlphaFold DB G0TQ89

References