Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1491196..1491467 | Replicon | chromosome |
| Accession | NZ_CP040667 | ||
| Organism | Escherichia coli strain S17-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1491326..1491429 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1491196..1491467 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGH86_RS07100 | 1487751..1488413 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FGH86_RS07105 | 1488437..1489093 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FGH86_RS07110 | 1489195..1489425 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FGH86_RS07115 | 1489564..1489938 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FGH86_RS07120 | 1489942..1490814 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FGH86_RS07125 | 1490827..1491168 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1491196..1491467 | - | 272 | - | - | Antitoxin |
| - | 1491326..1491429 | + | 104 | - | - | Toxin |
| FGH86_RS07130 | 1491564..1492220 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FGH86_RS07135 | 1492221..1492412 | - | 192 | WP_000457842.1 | YebW family protein | - |
| FGH86_RS07140 | 1492517..1492753 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FGH86_RS07145 | 1492871..1494310 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T126446 NZ_CP040667:1491326-1491429 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT126446 NZ_CP040667:c1491467-1491196 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
