Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1911982..1912253 | Replicon | chromosome |
| Accession | NZ_CP040663 | ||
| Organism | Escherichia coli strain EK2009 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1912020..1912123 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1911982..1912253 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE383_RS09450 | 1909139..1910578 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FE383_RS09455 | 1910696..1910932 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FE383_RS09460 | 1911037..1911228 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FE383_RS09465 | 1911229..1911885 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1911982..1912253 | + | 272 | - | - | Antitoxin |
| - | 1912020..1912123 | - | 104 | - | - | Toxin |
| FE383_RS09470 | 1912281..1912622 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FE383_RS09475 | 1912635..1913507 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FE383_RS09480 | 1913511..1913885 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FE383_RS09485 | 1914024..1914254 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FE383_RS09490 | 1914356..1915012 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FE383_RS09495 | 1915036..1915698 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T126353 NZ_CP040663:c1912123-1912020 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT126353 NZ_CP040663:1911982-1912253 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
