Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 4078056..4078675 Replicon chromosome
Accession NZ_CP040660
Organism Klebsiella pneumoniae strain 2019011308

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag FE373_RS19805 Protein ID WP_002892050.1
Coordinates 4078457..4078675 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag FE373_RS19800 Protein ID WP_002892066.1
Coordinates 4078056..4078430 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FE373_RS19790 (4073208) 4073208..4074401 + 1194 WP_002892072.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
FE373_RS19795 (4074424) 4074424..4077570 + 3147 WP_002892069.1 multidrug efflux RND transporter permease subunit AcrB -
FE373_RS19800 (4078056) 4078056..4078430 + 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
FE373_RS19805 (4078457) 4078457..4078675 + 219 WP_002892050.1 HHA domain-containing protein Toxin
FE373_RS19810 (4078834) 4078834..4079400 + 567 WP_002892030.1 maltose O-acetyltransferase -
FE373_RS19815 (4079372) 4079372..4079512 - 141 WP_004147370.1 hypothetical protein -
FE373_RS19820 (4079533) 4079533..4080003 + 471 WP_002892026.1 YlaC family protein -
FE373_RS19825 (4079978) 4079978..4081429 - 1452 WP_002892023.1 PLP-dependent aminotransferase family protein -
FE373_RS19830 (4081530) 4081530..4082228 + 699 WP_002892021.1 GNAT family protein -
FE373_RS19835 (4082225) 4082225..4082365 - 141 WP_002892018.1 type B 50S ribosomal protein L36 -
FE373_RS19840 (4082365) 4082365..4082628 - 264 WP_002892011.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T126329 WP_002892050.1 NZ_CP040660:4078457-4078675 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T126329 NZ_CP040660:4078457-4078675 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACCTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT126329 WP_002892066.1 NZ_CP040660:4078056-4078430 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT126329 NZ_CP040660:4078056-4078430 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References