Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2056303..2056574 | Replicon | chromosome |
| Accession | NZ_CP040643 | ||
| Organism | Escherichia coli strain BE104 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2056341..2056444 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2056303..2056574 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGC38_RS10310 | 2053460..2054899 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FGC38_RS10315 | 2055017..2055253 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FGC38_RS10320 | 2055358..2055549 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FGC38_RS10325 | 2055550..2056206 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2056303..2056574 | + | 272 | - | - | Antitoxin |
| - | 2056341..2056444 | - | 104 | - | - | Toxin |
| FGC38_RS10330 | 2056602..2056943 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FGC38_RS10335 | 2056956..2057828 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FGC38_RS10340 | 2057832..2058206 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FGC38_RS10345 | 2058345..2058575 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FGC38_RS10350 | 2058677..2059333 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FGC38_RS10355 | 2059357..2060019 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T126266 NZ_CP040643:c2056444-2056341 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT126266 NZ_CP040643:2056303-2056574 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
