Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 305345..305943 Replicon plasmid unnamed2
Accession NZ_CP040642
Organism Agrobacterium sp. T29

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FGF54_RS26510 Protein ID WP_142781872.1
Coordinates 305345..305638 (-) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FGF54_RS26515 Protein ID WP_142781873.1
Coordinates 305635..305943 (-) Length 103 a.a.

Genomic Context

FGF54_RS26500FGF54_RS26495FGF54_RS27405FGF54_RS26505FGF54_RS26510FGF54_RS26515FGF54_RS26530FGF54_RS26535FGF54_RS26540FGF54_RS26545
Location: 303583..303861 (279 bp)
Type: Others
Protein ID: WP_142781870.1
Location: 301774..303213 (1440 bp)
Type: Others
Protein ID: WP_142781995.1
Location: 303901..304071 (171 bp)
Type: Others
Protein ID: WP_168208279.1
Location: 304389..304688 (300 bp)
Type: Others
Protein ID: WP_142781871.1
Location: 305345..305638 (294 bp)
Type: Toxin
Protein ID: WP_142781872.1
Location: 305635..305943 (309 bp)
Type: Antitoxin
Protein ID: WP_142781873.1
Location: 306534..307142 (609 bp)
Type: Others
Protein ID: WP_142781875.1
Location: 307146..307433 (288 bp)
Type: Others
Protein ID: WP_142781876.1
Location: 307485..308108 (624 bp)
Type: Others
Protein ID: WP_142781877.1
Location: 308140..309231 (1092 bp)
Type: Others
Protein ID: WP_142781878.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FGF54_RS26495301774..303213-1440WP_142781995.1PAS domain-containing protein-
FGF54_RS26500303583..303861+279WP_142781870.1HU family DNA-binding protein-
FGF54_RS27405303901..304071-171WP_168208279.1hypothetical protein-
FGF54_RS26505304389..304688-300WP_142781871.1DUF736 domain-containing protein-
FGF54_RS26510305345..305638-294WP_142781872.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FGF54_RS26515305635..305943-309WP_142781873.1type II toxin-antitoxin system RelB/DinJ family antitoxinAntitoxin
FGF54_RS26530306534..307142-609WP_142781875.1DNA-3-methyladenine glycosylase I-
FGF54_RS26535307146..307433-288WP_142781876.1hypothetical protein-
FGF54_RS26540307485..308108-624WP_142781877.1TetR/AcrR family transcriptional regulator-
FGF54_RS26545308140..309231-1092WP_142781878.1alkene reductase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-insideConjugative plasmid--1..451191451191


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-52)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 10505.80 Da        Isoelectric Point: 5.6558

>T126242 WP_142781872.1 NZ_CP040642:c305638-305345 [Agrobacterium sp. T29]
VKLVWSAFALSDRDGIFTHIEADNPAAAISVDERITSAARRLTDFPESGRPGRVDGTRELVITGTPYIAAYTVSETTVRV
LRVLHGAQQWPDTLPGG

Download         Length: 294 bp

>T126242 NZ_CP040642:c305638-305345 [Agrobacterium sp. T29]
GTGAAACTGGTATGGTCGGCTTTTGCGCTTTCCGATCGCGACGGCATATTCACTCATATAGAGGCGGATAATCCCGCTGC
TGCTATCTCTGTCGATGAACGGATCACAAGCGCCGCTCGCCGCCTTACCGATTTCCCCGAGAGCGGCCGTCCGGGCAGGG
TTGATGGCACACGCGAATTGGTGATCACAGGTACGCCATACATCGCGGCTTACACCGTCTCGGAAACGACTGTGCGCGTC
CTTCGCGTTTTGCACGGCGCGCAACAGTGGCCGGACACATTGCCCGGCGGCTGA

Antitoxin


Download         Length: 103 a.a.        Molecular weight: 11058.50 Da        Isoelectric Point: 5.1457

>AT126242 WP_142781873.1 NZ_CP040642:c305943-305635 [Agrobacterium sp. T29]
MAANALVQTRIDADVRDRASAVLESMGLTVSDAVRILLTRTANEGALPLELVSGGEAHDTWFRAKVLEALNDVRPDIPAD
EVEAHFARRRMAAARRSGDMTS

Download         Length: 309 bp

>AT126242 NZ_CP040642:c305943-305635 [Agrobacterium sp. T29]
ATGGCCGCAAATGCTCTCGTTCAAACCCGCATCGACGCCGATGTCCGGGACCGCGCATCGGCTGTGCTGGAAAGCATGGG
CCTTACAGTTTCTGACGCAGTTCGCATCCTGCTGACCCGTACCGCCAACGAAGGCGCCCTGCCGCTGGAGCTCGTATCGG
GCGGTGAGGCGCATGATACCTGGTTCCGTGCCAAGGTGCTGGAGGCGCTCAACGATGTCAGGCCAGACATTCCCGCCGAT
GAAGTCGAGGCGCATTTCGCACGGCGCCGGATGGCTGCGGCACGCCGTTCGGGCGATATGACATCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References