Detailed information of TA system TA126242

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): relBE/RelE-RelB
• Location: 305345..305943
• Replicon: plasmid unnamed2
• Accession: NZ_CP040642
• Organism: Agrobacterium sp. T29

Toxin (Protein)

• Gene name: relE
• Uniprot ID: -
• Locus tag: FGF54_RS26510
• Protein ID: WP_142781872.1
• Coordinates: 305345..305638 (-)
• Length: 98 a.a.

Antitoxin (Protein)

• Gene name: relB
• Uniprot ID: -
• Locus tag: FGF54_RS26515
• Protein ID: WP_142781873.1
• Coordinates: 305635..305943 (-)
• Length: 103 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FGF54_RS26495	301774..303213	-	1440	WP_142781995.1	PAS domain-containing protein	-
FGF54_RS26500	303583..303861	+	279	WP_142781870.1	HU family DNA-binding protein	-
FGF54_RS27405	303901..304071	-	171	WP_168208279.1	hypothetical protein	-
FGF54_RS26505	304389..304688	-	300	WP_142781871.1	DUF736 domain-containing protein	-
FGF54_RS26510	305345..305638	-	294	WP_142781872.1	type II toxin-antitoxin system RelE/ParE family toxin	Toxin
FGF54_RS26515	305635..305943	-	309	WP_142781873.1	type II toxin-antitoxin system RelB/DinJ family antitoxin	Antitoxin
FGF54_RS26530	306534..307142	-	609	WP_142781875.1	DNA-3-methyladenine glycosylase I	-
FGF54_RS26535	307146..307433	-	288	WP_142781876.1	hypothetical protein	-
FGF54_RS26540	307485..308108	-	624	WP_142781877.1	TetR/AcrR family transcriptional regulator	-
FGF54_RS26545	308140..309231	-	1092	WP_142781878.1	alkene reductase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	-	inside	Conjugative plasmid	-	-	1..451191	451191

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (4-90)

Antitoxin

• RelB antitoxin/Antitoxin DinJ (4-52)

Sequences

Toxin

Protein

• Length: 98 a.a.
• Molecular weight: 10505.80 Da
• Isoelectric Point: 5.6558

>T126242 WP_142781872.1 NZ_CP040642:c305638-305345 [Agrobacterium sp. T29]
VKLVWSAFALSDRDGIFTHIEADNPAAAISVDERITSAARRLTDFPESGRPGRVDGTRELVITGTPYIAAYTVSETTVRV
LRVLHGAQQWPDTLPGG

Nucleotide

• Length: 294 bp

>T126242 NZ_CP040642:c305638-305345 [Agrobacterium sp. T29]
GTGAAACTGGTATGGTCGGCTTTTGCGCTTTCCGATCGCGACGGCATATTCACTCATATAGAGGCGGATAATCCCGCTGC
TGCTATCTCTGTCGATGAACGGATCACAAGCGCCGCTCGCCGCCTTACCGATTTCCCCGAGAGCGGCCGTCCGGGCAGGG
TTGATGGCACACGCGAATTGGTGATCACAGGTACGCCATACATCGCGGCTTACACCGTCTCGGAAACGACTGTGCGCGTC
CTTCGCGTTTTGCACGGCGCGCAACAGTGGCCGGACACATTGCCCGGCGGCTGA

Antitoxin

Protein

• Length: 103 a.a.
• Molecular weight: 11058.50 Da
• Isoelectric Point: 5.1457

>AT126242 WP_142781873.1 NZ_CP040642:c305943-305635 [Agrobacterium sp. T29]
MAANALVQTRIDADVRDRASAVLESMGLTVSDAVRILLTRTANEGALPLELVSGGEAHDTWFRAKVLEALNDVRPDIPAD
EVEAHFARRRMAAARRSGDMTS

Nucleotide

• Length: 309 bp

>AT126242 NZ_CP040642:c305943-305635 [Agrobacterium sp. T29]
ATGGCCGCAAATGCTCTCGTTCAAACCCGCATCGACGCCGATGTCCGGGACCGCGCATCGGCTGTGCTGGAAAGCATGGG
CCTTACAGTTTCTGACGCAGTTCGCATCCTGCTGACCCGTACCGCCAACGAAGGCGCCCTGCCGCTGGAGCTCGTATCGG
GCGGTGAGGCGCATGATACCTGGTTCCGTGCCAAGGTGCTGGAGGCGCTCAACGATGTCAGGCCAGACATTCCCGCCGAT
GAAGTCGAGGCGCATTTCGCACGGCGCCGGATGGCTGCGGCACGCCGTTCGGGCGATATGACATCGTGA