Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/YoeB-RelB
Location 2039187..2039774 Replicon chromosome
Accession NZ_CP040640
Organism Agrobacterium sp. T29

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FGF54_RS10325 Protein ID WP_035260940.1
Coordinates 2039187..2039453 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A1S7TRQ6
Locus tag FGF54_RS10330 Protein ID WP_035260938.1
Coordinates 2039523..2039774 (-) Length 84 a.a.

Genomic Context

FGF54_RS10300FGF54_RS10305FGF54_RS10320FGF54_RS10310FGF54_RS10315FGF54_RS10325FGF54_RS10330FGF54_RS10335FGF54_RS10340FGF54_RS10345FGF54_RS10350FGF54_RS10355FGF54_RS10360FGF54_RS10365FGF54_RS10370
Location: 2034639..2035358 (720 bp)
Type: Others
Protein ID: WP_142780200.1
Location: 2035438..2036571 (1134 bp)
Type: Others
Protein ID: WP_168208055.1
Location: 2037891..2039183 (1293 bp)
Type: Others
Protein ID: WP_168208129.1
Location: 2036776..2037120 (345 bp)
Type: Others
Protein ID: WP_003524247.1
Location: 2037117..2037701 (585 bp)
Type: Others
Protein ID: WP_142779601.1
Location: 2039187..2039453 (267 bp)
Type: Toxin
Protein ID: WP_035260940.1
Location: 2039523..2039774 (252 bp)
Type: Antitoxin
Protein ID: WP_035260938.1
Location: 2039827..2040576 (750 bp)
Type: Others
Protein ID: WP_142779603.1
Location: 2040582..2040938 (357 bp)
Type: Others
Protein ID: WP_035260925.1
Location: 2040935..2041435 (501 bp)
Type: Others
Protein ID: WP_142779604.1
Location: 2041439..2041801 (363 bp)
Type: Others
Protein ID: WP_035220083.1
Location: 2041798..2042088 (291 bp)
Type: Others
Protein ID: WP_035220685.1
Location: 2042142..2042639 (498 bp)
Type: Others
Protein ID: WP_142779605.1
Location: 2042639..2043562 (924 bp)
Type: Others
Protein ID: WP_142780201.1
Location: 2043767..2044474 (708 bp)
Type: Others
Protein ID: WP_003524263.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FGF54_RS103002034639..2035358+720WP_142780200.1sulfite exporter TauE/SafE family protein-
FGF54_RS103052035438..2036571+1134WP_168208055.1alpha-hydroxy-acid oxidizing protein-
FGF54_RS103102036776..2037120-345WP_003524247.1multidrug efflux SMR transporter-
FGF54_RS103152037117..2037701-585WP_142779601.1TetR/AcrR family transcriptional regulator-
FGF54_RS103202037891..2039183+1293WP_168208129.1D-alanyl-D-alanine carboxypeptidase-
FGF54_RS103252039187..2039453-267WP_035260940.1Txe/YoeB family addiction module toxinToxin
FGF54_RS103302039523..2039774-252WP_035260938.1type II toxin-antitoxin system prevent-host-death family antitoxinAntitoxin
FGF54_RS103352039827..2040576-750WP_142779603.1metallophosphatase family protein-
FGF54_RS103402040582..2040938-357WP_035260925.1hydroxyisourate hydrolase-
FGF54_RS103452040935..2041435-501WP_142779604.1ureidoglycolate lyase-
FGF54_RS103502041439..2041801-363WP_035220083.1DUF86 domain-containing protein-
FGF54_RS103552041798..2042088-291WP_035220685.1nucleotidyltransferase family protein-
FGF54_RS103602042142..2042639-498WP_142779605.12-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase-
FGF54_RS103652042639..2043562-924WP_142780201.1allantoinase PuuE-
FGF54_RS103702043767..2044474-708WP_003524263.1DUF1045 domain-containing protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(5-88)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10870.49 Da        Isoelectric Point: 9.0866

>T126238 WP_035260940.1 NZ_CP040640:c2039453-2039187 [Agrobacterium sp. T29]
IALGWSHQGWEDYLHWQQYDRKMLERINELIKDCRRHPFEGIGKPEPLRFQLKGLWSRRISQEHRLVYELRGEAEKTVLI
IHQCRFHY

Download         Length: 267 bp

>T126238 NZ_CP040640:c2039453-2039187 [Agrobacterium sp. T29]
ATTGCTCTCGGCTGGAGCCATCAGGGCTGGGAAGACTATCTTCACTGGCAGCAATATGATCGCAAGATGCTCGAACGCAT
CAATGAACTCATCAAGGATTGTCGACGGCATCCATTTGAAGGGATCGGAAAACCTGAGCCACTGCGTTTTCAGTTGAAGG
GCCTATGGTCACGCAGGATTTCGCAGGAGCATCGGCTTGTCTACGAGTTGCGCGGCGAAGCGGAAAAGACGGTTCTGATC
ATTCACCAGTGCCGTTTCCACTACTGA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9432.65 Da        Isoelectric Point: 4.5242

>AT126238 WP_035260938.1 NZ_CP040640:c2039774-2039523 [Agrobacterium sp. T29]
MRTVMFSKARESLASLLDEVSQDRVTVEIVRRDKPSAVLIDKDEYEGLMETLHLCSSPENFARLRKSMSDVDAGTFESHD
LID

Download         Length: 252 bp

>AT126238 NZ_CP040640:c2039774-2039523 [Agrobacterium sp. T29]
ATGCGTACCGTTATGTTTTCGAAAGCACGCGAATCCCTTGCATCGCTTCTGGATGAAGTGTCGCAGGACCGGGTGACTGT
GGAAATCGTGCGCCGCGACAAGCCGTCCGCCGTTCTTATCGACAAGGACGAGTATGAAGGCTTGATGGAAACCTTGCATC
TCTGCTCGTCGCCGGAGAATTTCGCCAGACTTAGAAAGTCGATGTCCGATGTGGACGCGGGTACTTTCGAAAGTCATGAT
CTTATCGACTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
AlphaFold DBA0A1S7TRQ6

References