Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PumA-relB/upstrm_HI1419-dnstrm_HI1420
Location 533048..533642 Replicon chromosome
Accession NZ_CP040640
Organism Agrobacterium sp. T29

Toxin (Protein)


Gene name PumA Uniprot ID -
Locus tag FGF54_RS02690 Protein ID WP_137003032.1
Coordinates 533328..533642 (-) Length 105 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FGF54_RS02685 Protein ID WP_080833761.1
Coordinates 533048..533347 (-) Length 100 a.a.

Genomic Context

FGF54_RS02660FGF54_RS02665FGF54_RS02680FGF54_RS02695FGF54_RS02700FGF54_RS02705FGF54_RS02670FGF54_RS02675FGF54_RS02685FGF54_RS02690FGF54_RS02710
Location: 528178..529176 (999 bp)
Type: Others
Protein ID: WP_142778852.1
Location: 529311..529931 (621 bp)
Type: Others
Protein ID: WP_078051121.1
Location: 531482..533011 (1530 bp)
Type: Others
Protein ID: WP_168207983.1
Location: 533880..534890 (1011 bp)
Type: Others
Protein ID: WP_142780109.1
Location: 534892..536517 (1626 bp)
Type: Others
Protein ID: WP_142778855.1
Location: 536690..537655 (966 bp)
Type: Others
Protein ID: WP_125144687.1
Location: 530083..530742 (660 bp)
Type: Others
Protein ID: WP_142778853.1
Location: 530825..531340 (516 bp)
Type: Others
Protein ID: WP_142778854.1
Location: 533048..533347 (300 bp)
Type: Antitoxin
Protein ID: WP_080833761.1
Location: 533328..533642 (315 bp)
Type: Toxin
Protein ID: WP_137003032.1
Location: 537739..538521 (783 bp)
Type: Others
Protein ID: WP_168207984.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FGF54_RS02660528178..529176+999WP_142778852.1asparaginase-
FGF54_RS02665529311..529931+621WP_078051121.1glutathione S-transferase family protein-
FGF54_RS02670530083..530742-660WP_142778853.1glutathione S-transferase family protein-
FGF54_RS02675530825..531340-516WP_142778854.1MarR family transcriptional regulator-
FGF54_RS02680531482..533011+1530WP_168207983.1MFS transporter-
FGF54_RS02685533048..533347-300WP_080833761.1putative addiction module antidote proteinAntitoxin
FGF54_RS02690533328..533642-315WP_137003032.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FGF54_RS02695533880..534890+1011WP_142780109.1ligase-associated DNA damage response exonuclease-
FGF54_RS02700534892..536517+1626WP_142778855.1cisplatin damage response ATP-dependent DNA ligase-
FGF54_RS02705536690..537655+966WP_125144687.1S9 family peptidase-
FGF54_RS02710537739..538521-783WP_168207984.1mannosyltransferase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Addiction module killer protein, predicted

(3-96)

Antitoxin

Uncharacterized protein HI1420

(4-95)


Sequences

Toxin        


Download         Length: 105 a.a.        Molecular weight: 11659.36 Da        Isoelectric Point: 10.3355

>T126235 WP_137003032.1 NZ_CP040640:c533642-533328 [Agrobacterium sp. T29]
MNSFEKSAEFDEWLKALKDRAGKVRILHRLTAAEHGNFGDCEPVGGGVSEMRIHFGPGYRVYFTRVGKRIYFLLIGGDKS
SQKRDIKRAIGMAQTIGRDGRDGI

Download         Length: 315 bp

>T126235 NZ_CP040640:c533642-533328 [Agrobacterium sp. T29]
ATGAACAGCTTCGAGAAATCGGCGGAGTTCGACGAATGGCTGAAGGCTTTGAAAGATCGTGCCGGCAAGGTGCGGATTCT
TCATCGTCTCACGGCGGCGGAGCATGGGAATTTCGGCGATTGTGAGCCGGTGGGTGGAGGCGTTTCAGAAATGCGTATCC
ACTTCGGTCCCGGTTATCGGGTCTATTTCACTCGCGTTGGCAAGAGGATTTATTTCCTTCTGATCGGCGGGGACAAGTCT
TCGCAAAAGCGGGACATAAAACGCGCAATCGGGATGGCACAGACAATAGGAAGGGATGGCCGTGACGGAATTTAG

Antitoxin


Download         Length: 100 a.a.        Molecular weight: 10712.18 Da        Isoelectric Point: 4.6263

>AT126235 WP_080833761.1 NZ_CP040640:c533347-533048 [Agrobacterium sp. T29]
MAVTEFSQFDVSDYLDSDEAMIEYLAVAMEDENPDVFIAALGAVARARGMSHVADASGLGRESLYKALKPGSKLRYETVQ
KVLHALGFRLAVEKSLSAA

Download         Length: 300 bp

>AT126235 NZ_CP040640:c533347-533048 [Agrobacterium sp. T29]
ATGGCCGTGACGGAATTTAGCCAATTCGATGTGTCAGACTATCTGGATAGCGATGAAGCCATGATCGAATATCTGGCGGT
CGCAATGGAAGACGAAAACCCCGATGTCTTCATTGCCGCCCTTGGCGCGGTCGCCAGGGCGCGCGGAATGTCACATGTTG
CGGATGCTTCGGGTCTGGGTCGCGAAAGCCTCTACAAAGCACTTAAGCCCGGTTCGAAGCTTCGCTATGAAACCGTGCAG
AAAGTCCTGCATGCGCTGGGCTTCCGACTGGCCGTCGAAAAATCATTGAGTGCTGCGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References