Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/CC2985(antitoxin)
Location 484646..485190 Replicon chromosome
Accession NZ_CP040640
Organism Agrobacterium sp. T29

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag FGF54_RS02430 Protein ID WP_168207976.1
Coordinates 484900..485190 (+) Length 97 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag FGF54_RS02425 Protein ID WP_142778826.1
Coordinates 484646..484897 (+) Length 84 a.a.

Genomic Context

FGF54_RS02395FGF54_RS02400FGF54_RS02415FGF54_RS02425FGF54_RS02430FGF54_RS02445FGF54_RS02450FGF54_RS02455FGF54_RS02390FGF54_RS02405FGF54_RS02435FGF54_RS02440
Location: 480640..481320 (681 bp)
Type: Others
Protein ID: WP_065654301.1
Location: 481366..481827 (462 bp)
Type: Others
Protein ID: WP_142780104.1
Location: 483125..484270 (1146 bp)
Type: Others
Protein ID: WP_003520492.1
Location: 484646..484897 (252 bp)
Type: Antitoxin
Protein ID: WP_142778826.1
Location: 484900..485190 (291 bp)
Type: Toxin
Protein ID: WP_168207976.1
Location: 487075..487539 (465 bp)
Type: Others
Protein ID: WP_142778829.1
Location: 487567..488088 (522 bp)
Type: Others
Protein ID: WP_080817472.1
Location: 488218..488898 (681 bp)
Type: Others
Protein ID: WP_142778830.1
Location: 479728..480417 (690 bp)
Type: Others
Protein ID: WP_003520496.1
Location: 481787..482887 (1101 bp)
Type: Others
Protein ID: WP_142778825.1
Location: 485228..485839 (612 bp)
Type: Others
Protein ID: WP_035262998.1
Location: 485836..486948 (1113 bp)
Type: Others
Protein ID: WP_142778828.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FGF54_RS02390479728..480417-690WP_003520496.1HAD family hydrolase-
FGF54_RS02395480640..481320+681WP_065654301.1GntR family transcriptional regulator-
FGF54_RS02400481366..481827+462WP_142780104.1DUF1284 domain-containing protein-
FGF54_RS02405481787..482887-1101WP_142778825.1hypothetical protein-
FGF54_RS02415483125..484270+1146WP_003520492.1site-specific DNA-methyltransferase-
FGF54_RS02425484646..484897+252WP_142778826.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
FGF54_RS02430484900..485190+291WP_168207976.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FGF54_RS02435485228..485839-612WP_035262998.1HAD family phosphatase-
FGF54_RS02440485836..486948-1113WP_142778828.1A/G-specific adenine glycosylase-
FGF54_RS02445487075..487539+465WP_142778829.1hypothetical protein-
FGF54_RS02450487567..488088+522WP_080817472.1DUF721 domain-containing protein-
FGF54_RS02455488218..488898+681WP_142778830.1DsbA family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-92)

Antitoxin

Antitoxin ParD

(1-80)


Sequences

Toxin        


Download         Length: 97 a.a.        Molecular weight: 11270.00 Da        Isoelectric Point: 6.2182

>T126234 WP_168207976.1 NZ_CP040640:484900-485190 [Agrobacterium sp. T29]
MGFRLSLLAEEDVIRIVEEGIVLFGLAQAQKYHRELYEIFELISLNPRMARERHELLPPLRIHRFRAHLVVYAVGADDDV
LIVRVRHAHEDWANES

Download         Length: 291 bp

>T126234 NZ_CP040640:484900-485190 [Agrobacterium sp. T29]
ATGGGCTTTCGCCTGTCTCTGCTCGCGGAAGAGGACGTCATTCGCATAGTCGAAGAAGGCATCGTGTTATTCGGGCTGGC
GCAGGCGCAAAAATATCACCGGGAACTCTATGAGATATTTGAGCTGATATCTCTCAACCCACGAATGGCACGAGAGCGGC
ATGAGTTGTTACCGCCGCTGCGTATCCATCGGTTCAGGGCACATCTGGTTGTTTATGCCGTGGGAGCGGACGATGACGTC
CTGATCGTCCGCGTCCGCCACGCACATGAAGACTGGGCCAACGAGTCGTAG

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9415.69 Da        Isoelectric Point: 10.1452

>AT126234 WP_142778826.1 NZ_CP040640:484646-484897 [Agrobacterium sp. T29]
MATMNISLPAPMKEWVEAQSRTGRYSNASDYVRDLIRKDQERGEKIAAMQRFVDEGLRSGVGHRSQEALFAEAEARSMKR
KIG

Download         Length: 252 bp

>AT126234 NZ_CP040640:484646-484897 [Agrobacterium sp. T29]
ATGGCGACCATGAACATATCGCTGCCTGCGCCCATGAAAGAATGGGTCGAGGCCCAATCCAGGACAGGTCGTTACTCCAA
TGCGAGTGACTACGTGCGAGACCTGATCCGCAAGGATCAGGAACGAGGCGAAAAAATCGCGGCGATGCAGCGTTTTGTGG
ATGAGGGACTGCGGAGTGGCGTCGGGCATCGCTCGCAGGAGGCCCTGTTCGCCGAGGCTGAAGCCCGCTCCATGAAACGC
AAAATCGGCTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References