Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2858603..2858753 | Replicon | chromosome |
| Accession | NZ_CP040606 | ||
| Organism | Enterobacter ludwigii strain I42 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2858615..2858718 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2858603..2858753 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELLBI42_RS13660 | 2854454..2854693 | + | 240 | WP_020883412.1 | YebV family protein | - |
| ELLBI42_RS13665 | 2854728..2855372 | - | 645 | WP_020883411.1 | protein-serine/threonine phosphatase | - |
| ELLBI42_RS13670 | 2855540..2856481 | + | 942 | WP_138614240.1 | VirK/YbjX family protein | - |
| ELLBI42_RS13675 | 2857032..2857290 | + | 259 | Protein_2652 | XRE family transcriptional regulator | - |
| ELLBI42_RS13680 | 2857301..2858167 | + | 867 | WP_047356859.1 | benzoate transporter | - |
| - | 2858603..2858753 | + | 151 | - | - | Antitoxin |
| - | 2858615..2858718 | - | 104 | - | - | Toxin |
| ELLBI42_RS13685 | 2858857..2859195 | - | 339 | WP_014170622.1 | YebY family protein | - |
| ELLBI42_RS13690 | 2859212..2860081 | - | 870 | WP_138614242.1 | copper homeostasis membrane protein CopD | - |
| ELLBI42_RS13695 | 2860083..2860454 | - | 372 | WP_049023010.1 | CopC domain-containing protein YobA | - |
| ELLBI42_RS13700 | 2860592..2860822 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ELLBI42_RS13705 | 2860932..2861582 | + | 651 | WP_138614244.1 | carbon-nitrogen hydrolase family protein | - |
| ELLBI42_RS13710 | 2861607..2862269 | + | 663 | WP_138614246.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T126146 NZ_CP040606:c2858718-2858615 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT126146 NZ_CP040606:2858603-2858753 [Enterobacter ludwigii]
TTTATAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
TTTATAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
