Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3316705..3316976 | Replicon | chromosome |
| Accession | NZ_CP040572 | ||
| Organism | Escherichia coli O157:H7 strain ECP17-46 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3316743..3316846 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3316705..3316976 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FGA21_RS17350 | 3313862..3315301 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FGA21_RS17355 | 3315419..3315655 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FGA21_RS17360 | 3315760..3315951 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FGA21_RS17365 | 3315952..3316608 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3316705..3316976 | + | 272 | - | - | Antitoxin |
| - | 3316743..3316846 | - | 104 | - | - | Toxin |
| FGA21_RS17370 | 3317004..3317345 | - | 342 | WP_000976483.1 | YebY family protein | - |
| FGA21_RS17375 | 3317358..3318230 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| FGA21_RS17380 | 3318234..3318608 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| FGA21_RS17385 | 3318747..3318977 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FGA21_RS17390 | 3319079..3319735 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| FGA21_RS17395 | 3319759..3320421 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T126084 NZ_CP040572:c3316846-3316743 [Escherichia coli O157:H7]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT126084 NZ_CP040572:3316705-3316976 [Escherichia coli O157:H7]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
