Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3573337..3573482 | Replicon | chromosome |
| Accession | NZ_CP040539 | ||
| Organism | Klebsiella pneumoniae strain CR-HvKP4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3573373..3573475 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3573337..3573482 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FFT48_RS17470 | 3568467..3570527 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FFT48_RS17475 | 3570531..3571190 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FFT48_RS17480 | 3571269..3571499 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FFT48_RS17485 | 3571612..3571986 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FFT48_RS17490 | 3571990..3572859 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| FFT48_RS17495 | 3572876..3573214 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 3573337..3573482 | - | 146 | - | - | Antitoxin |
| - | 3573373..3573475 | + | 103 | - | - | Toxin |
| FFT48_RS30245 | 3573850..3573993 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FFT48_RS17505 | 3574098..3575066 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FFT48_RS17510 | 3575223..3575876 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| FFT48_RS17515 | 3575873..3576064 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FFT48_RS17520 | 3576162..3576401 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FFT48_RS17525 | 3576517..3577950 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T125957 NZ_CP040539:3573373-3573475 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT125957 NZ_CP040539:c3573482-3573337 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
