Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2798941..2799093 | Replicon | chromosome |
| Accession | NZ_CP040527 | ||
| Organism | Enterobacter ludwigii strain JP9 isolate Tobacco rhizosphere soil | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2798955..2799058 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2798941..2799093 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ELJP9_RS13175 | 2795215..2796657 | + | 1443 | WP_138013969.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ELJP9_RS13180 | 2796763..2797002 | + | 240 | WP_020883412.1 | YebV family protein | - |
| ELJP9_RS13185 | 2797037..2797681 | - | 645 | WP_050736985.1 | protein-serine/threonine phosphatase | - |
| ELJP9_RS13190 | 2797849..2798790 | + | 942 | WP_020883410.1 | VirK/YbjX family protein | - |
| - | 2798941..2799093 | + | 153 | - | - | Antitoxin |
| - | 2798955..2799058 | - | 104 | - | - | Toxin |
| ELJP9_RS13195 | 2799197..2799535 | - | 339 | WP_014170622.1 | YebY family protein | - |
| ELJP9_RS13200 | 2799532..2800422 | - | 891 | WP_138278285.1 | copper homeostasis membrane protein CopD | - |
| ELJP9_RS13205 | 2800424..2800795 | - | 372 | WP_041162736.1 | CopC domain-containing protein YobA | - |
| ELJP9_RS13210 | 2800933..2801163 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| ELJP9_RS13215 | 2801273..2801923 | + | 651 | WP_020883406.1 | carbon-nitrogen hydrolase family protein | - |
| ELJP9_RS13220 | 2801948..2802610 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125904 NZ_CP040527:c2799058-2798955 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT125904 NZ_CP040527:2798941-2799093 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
