Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2295893..2296161 | Replicon | chromosome |
| Accession | NZ_CP040456 | ||
| Organism | Escherichia coli strain UPEC132 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2296021..2296123 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2295893..2296161 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE252_RS12540 | 2292447..2293109 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FE252_RS12545 | 2293132..2293788 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| FE252_RS12550 | 2293890..2294120 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FE252_RS12555 | 2294259..2294633 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FE252_RS12560 | 2294637..2295509 | + | 873 | WP_000879310.1 | copper homeostasis membrane protein CopD | - |
| FE252_RS12565 | 2295522..2295863 | + | 342 | WP_000977376.1 | YebY family protein | - |
| - | 2295893..2296161 | - | 269 | - | - | Antitoxin |
| - | 2296021..2296123 | + | 103 | - | - | Toxin |
| FE252_RS12570 | 2296258..2296914 | + | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| FE252_RS12575 | 2296915..2297106 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FE252_RS12580 | 2297211..2297447 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FE252_RS12585 | 2297565..2299004 | - | 1440 | WP_145747958.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T125845 NZ_CP040456:2296021-2296123 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT125845 NZ_CP040456:c2296161-2295893 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGGGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGGGGCGGTTTTTT
