Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4944725..4944970 | Replicon | chromosome |
| Accession | NZ_CP040443 | ||
| Organism | Escherichia sp. E4742 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4944739..4944842 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4944725..4944970 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEM44_RS24075 | 4941844..4943283 | + | 1440 | WP_135522187.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FEM44_RS24080 | 4943401..4943637 | + | 237 | WP_002431586.1 | DUF1480 family protein | - |
| FEM44_RS24085 | 4943743..4943934 | + | 192 | WP_135522186.1 | YebW family protein | - |
| FEM44_RS24090 | 4943935..4944591 | - | 657 | WP_135522185.1 | protein-serine/threonine phosphatase | - |
| - | 4944725..4944970 | + | 246 | - | - | Antitoxin |
| - | 4944739..4944842 | - | 104 | - | - | Toxin |
| FEM44_RS24100 | 4944999..4945340 | - | 342 | WP_130208467.1 | YebY family protein | - |
| FEM44_RS24105 | 4945354..4946226 | - | 873 | WP_138159223.1 | copper homeostasis membrane protein CopD | - |
| FEM44_RS24110 | 4946230..4946604 | - | 375 | WP_135522184.1 | CopC domain-containing protein YobA | - |
| FEM44_RS24115 | 4946743..4946973 | + | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| FEM44_RS24120 | 4947074..4947730 | + | 657 | WP_135522183.1 | carbon-nitrogen hydrolase family protein | - |
| FEM44_RS24125 | 4947755..4948417 | + | 663 | WP_130208475.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125822 NZ_CP040443:c4944842-4944739 [Escherichia sp. E4742]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 246 bp
>AT125822 NZ_CP040443:4944725-4944970 [Escherichia sp. E4742]
CTGGCTTAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCACACG
AAAAGTGGTCAGAAAAAAGCGTCTTTATCATCGTTTTAAAAGTAAAAAAAACGCCCGATCTGATAAAAGATCCTGGGCGT
TTTTTT
CTGGCTTAATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCACACG
AAAAGTGGTCAGAAAAAAGCGTCTTTATCATCGTTTTAAAAGTAAAAAAAACGCCCGATCTGATAAAAGATCCTGGGCGT
TTTTTT
