Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4332810..4332955 | Replicon | chromosome |
| Accession | NZ_CP040428 | ||
| Organism | Jejubacter calystegiae strain KSNA2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4332816..4332919 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4332810..4332955 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEM41_RS20205 | 4328105..4328524 | + | 420 | WP_138097966.1 | hypothetical protein | - |
| FEM41_RS20210 | 4328527..4329054 | + | 528 | WP_138097967.1 | pentapeptide repeat-containing protein | - |
| FEM41_RS20215 | 4329051..4329485 | + | 435 | WP_138097968.1 | plasmid protein | - |
| FEM41_RS20220 | 4329482..4329817 | + | 336 | WP_138097969.1 | hypothetical protein | - |
| FEM41_RS20225 | 4329807..4330019 | + | 213 | WP_138097970.1 | hypothetical protein | - |
| FEM41_RS20230 | 4330012..4330389 | + | 378 | WP_138097971.1 | hypothetical protein | - |
| FEM41_RS20235 | 4330391..4330606 | + | 216 | WP_138097972.1 | hypothetical protein | - |
| FEM41_RS24650 | 4330603..4331256 | + | 654 | WP_168198835.1 | DUF551 domain-containing protein | - |
| FEM41_RS20245 | 4331412..4331684 | + | 273 | WP_138097973.1 | excisionase | - |
| FEM41_RS20250 | 4331653..4332738 | + | 1086 | WP_138097974.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 4332810..4332955 | + | 146 | - | - | Antitoxin |
| - | 4332816..4332919 | - | 104 | - | - | Toxin |
| FEM41_RS20255 | 4333061..4333402 | - | 342 | WP_138097975.1 | YebY family protein | - |
| FEM41_RS20260 | 4333424..4334299 | - | 876 | WP_138097976.1 | copper homeostasis membrane protein CopD | - |
| FEM41_RS20265 | 4334301..4334669 | - | 369 | WP_138097977.1 | CopC domain-containing protein YobA | - |
| FEM41_RS20270 | 4334819..4335049 | + | 231 | WP_138097978.1 | DNA polymerase III subunit theta | - |
| FEM41_RS20275 | 4335176..4335913 | + | 738 | WP_138097979.1 | carbon-nitrogen hydrolase family protein | - |
| FEM41_RS20280 | 4335939..4336601 | + | 663 | WP_138097980.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4277310..4338709 | 61399 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125784 NZ_CP040428:c4332919-4332816 [Jejubacter calystegiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAT
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAT
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 146 bp
>AT125784 NZ_CP040428:4332810-4332955 [Jejubacter calystegiae]
ACAGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAAGAATAGATGAGAGTCGCAGGTTTTCCAGT
ACAGATAAAAAAAGACCGAATACGATTCCTATATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAAGAATAGATGAGAGTCGCAGGTTTTCCAGT
