Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3344746..3345017 | Replicon | chromosome |
| Accession | NZ_CP040397 | ||
| Organism | Escherichia coli strain BA22372 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3344784..3344887 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3344746..3345017 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEV15_RS16245 | 3341903..3343342 | + | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FEV15_RS16250 | 3343460..3343696 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FEV15_RS16255 | 3343801..3343992 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FEV15_RS16260 | 3343993..3344649 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3344746..3345017 | + | 272 | - | - | Antitoxin |
| - | 3344784..3344887 | - | 104 | - | - | Toxin |
| FEV15_RS16265 | 3345045..3345386 | - | 342 | WP_000976492.1 | YebY family protein | - |
| FEV15_RS16270 | 3345399..3346271 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FEV15_RS16275 | 3346275..3346649 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FEV15_RS16280 | 3346788..3347018 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FEV15_RS16285 | 3347120..3347776 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FEV15_RS16290 | 3347800..3348462 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125734 NZ_CP040397:c3344887-3344784 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT125734 NZ_CP040397:3344746-3345017 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
