Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2315613..2315780 | Replicon | chromosome |
| Accession | NZ_CP040392 | ||
| Organism | Kosakonia radicincitans strain DSM 107547 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2315673..2315775 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2315613..2315780 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEI17_RS11150 | 2310813..2312873 | + | 2061 | WP_007371601.1 | oligopeptidase B | - |
| FEI17_RS11155 | 2312870..2313532 | - | 663 | WP_007371602.1 | exodeoxyribonuclease X | - |
| FEI17_RS11160 | 2313544..2313774 | - | 231 | WP_007371603.1 | DNA polymerase III subunit theta | - |
| FEI17_RS11165 | 2313912..2314286 | + | 375 | WP_035887480.1 | CopC domain-containing protein YobA | - |
| FEI17_RS11170 | 2314290..2315159 | + | 870 | WP_007371605.1 | copper homeostasis membrane protein CopD | - |
| FEI17_RS11175 | 2315178..2315516 | + | 339 | WP_035887479.1 | YebY family protein | - |
| - | 2315613..2315780 | - | 168 | - | - | Antitoxin |
| - | 2315673..2315775 | + | 103 | - | - | Toxin |
| FEI17_RS11180 | 2316271..2316801 | + | 531 | WP_007371608.1 | lipocalin family protein | - |
| FEI17_RS11185 | 2316909..2317697 | - | 789 | WP_035887560.1 | MipA/OmpV family protein | - |
| FEI17_RS11190 | 2317825..2318520 | + | 696 | WP_149288677.1 | response regulator | - |
| FEI17_RS11195 | 2318517..2319695 | + | 1179 | WP_007371611.1 | two-component sensor histidine kinase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T125711 NZ_CP040392:2315673-2315775 [Kosakonia radicincitans]
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
GCCAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 168 bp
>AT125711 NZ_CP040392:c2315780-2315613 [Kosakonia radicincitans]
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
CAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTGGCACTTTAAGAATAGATGACGGCGTCAGCTTTTCCAGTCCGCGACAAAAGTGGT
CAGAAAAA
