Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 4077795..4078433 Replicon chromosome
Accession NZ_CP040390
Organism Escherichia coli strain A1_136

Toxin (Protein)


Gene name hicA Uniprot ID A0A7U9DHD1
Locus tag FE198_RS20160 Protein ID WP_000813795.1
Coordinates 4077795..4077971 (+) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag FE198_RS20165 Protein ID WP_076797675.1
Coordinates 4078017..4078433 (+) Length 139 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FE198_RS20140 4073417..4074628 - 1212 WP_071591517.1 BenE family transporter YdcO -
FE198_RS20145 4074681..4075217 + 537 WP_001551089.1 DNA-binding transcriptional regulator SutR -
FE198_RS20150 4075290..4077251 + 1962 WP_001551090.1 23S rRNA 5-hydroxycytidine C2501 synthase -
FE198_RS20155 4077343..4077573 - 231 WP_023910283.1 YncJ family protein -
FE198_RS20160 4077795..4077971 + 177 WP_000813795.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
FE198_RS20165 4078017..4078433 + 417 WP_076797675.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
FE198_RS20170 4078512..4079918 + 1407 WP_001551093.1 PLP-dependent aminotransferase family protein -
FE198_RS20175 4080163..4081308 + 1146 WP_001551094.1 ABC transporter substrate-binding protein -
FE198_RS20180 4081326..4082339 + 1014 WP_001551095.1 ABC transporter ATP-binding protein -
FE198_RS20185 4082340..4083281 + 942 WP_001251315.1 ABC transporter permease -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.



Sequences


Toxin        


Download         Length: 59 a.a.        Molecular weight: 6747.80 Da        Isoelectric Point: 11.5666

>T125681 WP_000813795.1 NZ_CP040390:4077795-4077971 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPSEEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T125681 NZ_CP040390:4077795-4077971 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTAAAACTCAG
GTTTCACGGGAGGCGCAGTGTCATGCCGCGTCACCCCAGCGAAGAGATTAAAGAACCATTGCGTAAAGCCATTCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15220.55 Da        Isoelectric Point: 4.7386

>AT125681 WP_076797675.1 NZ_CP040390:4078017-4078433 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPSNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT125681 NZ_CP040390:4078017-4078433 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
CCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATCAAATAGTCACGATCACTTTATTGAAGTGCCTTTGAGCGTCGCCTCTAAAGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAGGAAAT
TACTCGCTTATTTAACTTGCACCATGCGACAAAAATCGACGCCGTCCAGCTTGCGGCTAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB A0A7U9DHD1


Antitoxin

Source ID Structure

References