Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2224405..2224676 | Replicon | chromosome |
| Accession | NZ_CP040390 | ||
| Organism | Escherichia coli strain A1_136 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2224535..2224638 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2224405..2224676 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FE198_RS10935 | 2220960..2221622 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FE198_RS10940 | 2221646..2222302 | - | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| FE198_RS10945 | 2222404..2222634 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FE198_RS10950 | 2222773..2223147 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FE198_RS10955 | 2223151..2224023 | + | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| FE198_RS10960 | 2224036..2224377 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2224405..2224676 | - | 272 | - | - | Antitoxin |
| - | 2224535..2224638 | + | 104 | - | - | Toxin |
| FE198_RS10965 | 2224773..2225429 | + | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| FE198_RS10970 | 2225430..2225621 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FE198_RS10975 | 2225726..2225962 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FE198_RS10980 | 2226080..2227519 | - | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2216272..2240516 | 24244 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125664 NZ_CP040390:2224535-2224638 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT125664 NZ_CP040390:c2224676-2224405 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
