Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3642829..3642974 | Replicon | chromosome |
| Accession | NZ_CP040363 | ||
| Organism | Klebsiella pneumoniae strain R50 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3642865..3642967 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3642829..3642974 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEM43_RS18105 | 3637959..3640019 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FEM43_RS18110 | 3640023..3640682 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FEM43_RS18115 | 3640761..3640991 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FEM43_RS18120 | 3641104..3641478 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FEM43_RS18125 | 3641482..3642351 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| FEM43_RS18130 | 3642368..3642706 | + | 339 | WP_185955036.1 | YebY family protein | - |
| - | 3642829..3642974 | - | 146 | - | - | Antitoxin |
| - | 3642865..3642967 | + | 103 | - | - | Toxin |
| FEM43_RS18140 | 3643342..3643485 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FEM43_RS18145 | 3643590..3644558 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FEM43_RS18150 | 3644715..3645368 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| FEM43_RS18155 | 3645365..3645556 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FEM43_RS18160 | 3645654..3645893 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FEM43_RS18165 | 3646009..3647442 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T125642 NZ_CP040363:3642865-3642967 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT125642 NZ_CP040363:c3642974-3642829 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
