Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1953083..1953228 | Replicon | chromosome |
| Accession | NZ_CP040354 | ||
| Organism | Klebsiella pneumoniae strain P20 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1953119..1953221 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1953083..1953228 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEZ11_RS09390 | 1948213..1950273 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FEZ11_RS09395 | 1950277..1950936 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FEZ11_RS09400 | 1951015..1951245 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FEZ11_RS09405 | 1951358..1951732 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FEZ11_RS09410 | 1951736..1952605 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| FEZ11_RS09415 | 1952622..1952960 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1953083..1953228 | - | 146 | - | - | Antitoxin |
| - | 1953119..1953221 | + | 103 | - | - | Toxin |
| FEZ11_RS09420 | 1953596..1953739 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FEZ11_RS09425 | 1953844..1954812 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FEZ11_RS09430 | 1954969..1955622 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| FEZ11_RS09435 | 1955619..1955810 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FEZ11_RS09440 | 1955908..1956147 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FEZ11_RS09445 | 1956263..1957696 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T125620 NZ_CP040354:1953119-1953221 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT125620 NZ_CP040354:c1953228-1953083 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
