Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1882855..1883000 | Replicon | chromosome |
| Accession | NZ_CP040351 | ||
| Organism | Klebsiella pneumoniae strain P39 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1882891..1882993 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1882855..1883000 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEZ16_RS09065 (FEZ16_09190) | 1877985..1880045 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| FEZ16_RS09070 (FEZ16_09195) | 1880049..1880708 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FEZ16_RS09075 (FEZ16_09200) | 1880787..1881017 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FEZ16_RS09080 (FEZ16_09205) | 1881130..1881504 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FEZ16_RS09085 (FEZ16_09210) | 1881508..1882377 | + | 870 | WP_048331959.1 | copper homeostasis membrane protein CopD | - |
| FEZ16_RS09090 (FEZ16_09215) | 1882394..1882732 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1882855..1883000 | - | 146 | - | - | Antitoxin |
| - | 1882891..1882993 | + | 103 | - | - | Toxin |
| FEZ16_RS09095 | 1883369..1883512 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| FEZ16_RS09100 (FEZ16_09225) | 1883617..1884585 | - | 969 | WP_074185275.1 | VirK/YbjX family protein | - |
| FEZ16_RS09105 (FEZ16_09230) | 1884742..1885395 | + | 654 | WP_032447686.1 | protein-serine/threonine phosphatase | - |
| FEZ16_RS09110 (FEZ16_09235) | 1885392..1885583 | - | 192 | WP_002911395.1 | YebW family protein | - |
| FEZ16_RS09115 (FEZ16_09240) | 1885681..1885920 | - | 240 | WP_002911393.1 | YebV family protein | - |
| FEZ16_RS09120 (FEZ16_09245) | 1886036..1887469 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T125599 NZ_CP040351:1882891-1882993 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT125599 NZ_CP040351:c1883000-1882855 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
