Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3211367..3211638 | Replicon | chromosome |
| Accession | NZ_CP040314 | ||
| Organism | Escherichia coli strain MA11 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3211405..3211508 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3211367..3211638 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEL10_RS15770 | 3208524..3209963 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FEL10_RS15775 | 3210081..3210317 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FEL10_RS15780 | 3210422..3210613 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FEL10_RS15785 | 3210614..3211270 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3211367..3211638 | + | 272 | - | - | Antitoxin |
| - | 3211405..3211508 | - | 104 | - | - | Toxin |
| FEL10_RS15790 | 3211666..3212007 | - | 342 | WP_000976483.1 | YebY family protein | - |
| FEL10_RS15795 | 3212020..3212892 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| FEL10_RS15800 | 3212896..3213270 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| FEL10_RS15805 | 3213409..3213639 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FEL10_RS15810 | 3213741..3214397 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| FEL10_RS15815 | 3214421..3215083 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125497 NZ_CP040314:c3211508-3211405 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT125497 NZ_CP040314:3211367-3211638 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
