Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 51306..51831 Replicon plasmid pO157
Accession NZ_CP040312
Organism Escherichia coli strain F3398

Toxin (Protein)


Gene name ccdB Uniprot ID V0SSI5
Locus tag FEL04_RS26550 Protein ID WP_001159868.1
Coordinates 51526..51831 (+) Length 102 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID S1PPD8
Locus tag FEL04_RS26545 Protein ID WP_000813634.1
Coordinates 51306..51524 (+) Length 73 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FEL04_RS26515 46589..46819 + 231 WP_010891288.1 hypothetical protein -
FEL04_RS26520 46940..47680 + 741 WP_001066920.1 tyrosine-type recombinase/integrase -
FEL04_RS26525 47965..48942 - 978 WP_000361615.1 RepB family plasmid replication initiator protein -
FEL04_RS26530 49350..49550 - 201 WP_000708307.1 hypothetical protein -
FEL04_RS26535 49547..50167 - 621 WP_001248529.1 hypothetical protein -
FEL04_RS26540 50164..50847 - 684 WP_010891291.1 DNA-binding protein -
FEL04_RS26545 51306..51524 + 219 WP_000813634.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin
FEL04_RS26550 51526..51831 + 306 WP_001159868.1 type II toxin-antitoxin system toxin CcdB Toxin
FEL04_RS26555 51832..52638 + 807 WP_000016989.1 site-specific integrase -
FEL04_RS26570 54628..54990 + 363 Protein_53 RepB family plasmid replication initiator protein -
FEL04_RS26575 55578..56744 + 1167 WP_000772446.1 plasmid-partitioning protein SopA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - espP / stcE / exeE / exeG / hlyC / hlyA / hlyB / hlyD / toxB 1..92909 92909


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin CcdB

(2-100)

Antitoxin

Post-segregation antitoxin CcdA

(2-72)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 11706.51 Da        Isoelectric Point: 6.4674

>T125434 WP_001159868.1 NZ_CP040312:51526-51831 [Escherichia coli]
MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHIGDESWRMMTTDMASVPVSVIGEEV
ADLSHRENDIKNAINLMFWGI

Download         Length: 306 bp

>T125434 NZ_CP040312:51526-51831 [Escherichia coli]
ATGCAGTTTAAGGTTTACACCTATAAAAGAGAGAGCCGTTATCGTCTGTTTGTGGATGTACAGAGTGATATTATTGACAC
GCCCGGGCGACGGATGGTGATCCCCCTGGCCAGTGCACGTCTGCTGTCAGATAAAGTCTCCCGTGAACTTTACCCGGTGG
TGCATATCGGGGATGAAAGCTGGCGCATGATGACCACCGATATGGCCAGTGTGCCGGTCTCCGTTATCGGGGAAGAAGTG
GCTGATCTCAGCCACCGCGAAAATGACATCAAAAACGCCATTAACCTGATGTTCTGGGGAATATAA

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8372.34 Da        Isoelectric Point: 4.7405

>AT125434 WP_000813634.1 NZ_CP040312:51306-51524 [Escherichia coli]
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTMQNEARRLRAERWKAENQEGMAEVARFIEMNGSFADENRDW

Download         Length: 219 bp

>AT125434 NZ_CP040312:51306-51524 [Escherichia coli]
ATGAAGCAGCGTATTACAGTGACAGTTGACAGCGACAGCTATCAGTTGCTCAAGGCATATGATGTCAATATCTCCGGTCT
GGTAAGCACAACCATGCAGAATGAAGCCCGTCGTCTGCGTGCCGAACGCTGGAAAGCGGAAAATCAGGAAGGGATGGCTG
AGGTCGCCCGGTTTATTGAAATGAACGGCTCTTTTGCTGACGAGAACAGGGACTGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4VUB
PDB 2VUB
PDB 7EPI
PDB 7EPG
PDB 3VUB
PDB 1X75
PDB 1VUB
PDB 7EPJ
PDB 3HPW
PDB 3G7Z

Antitoxin

Source ID Structure
PDB 3TCJ
PDB 2H3A
PDB 2ADN
PDB 2ADL
PDB 3HPW
PDB 2H3C
PDB 3G7Z
AlphaFold DB A0A829CQY2

References