Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3213100..3213371 | Replicon | chromosome |
| Accession | NZ_CP040309 | ||
| Organism | Escherichia coli strain 21B8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3213138..3213241 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3213100..3213371 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEK99_RS15775 | 3210257..3211696 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FEK99_RS15780 | 3211814..3212050 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FEK99_RS15785 | 3212155..3212346 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FEK99_RS15790 | 3212347..3213003 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3213100..3213371 | + | 272 | - | - | Antitoxin |
| - | 3213138..3213241 | - | 104 | - | - | Toxin |
| FEK99_RS15795 | 3213399..3213740 | - | 342 | WP_000976483.1 | YebY family protein | - |
| FEK99_RS15800 | 3213753..3214625 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| FEK99_RS15805 | 3214629..3215003 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| FEK99_RS15810 | 3215142..3215372 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FEK99_RS15815 | 3215474..3216130 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| FEK99_RS15820 | 3216154..3216816 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125373 NZ_CP040309:c3213241-3213138 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT125373 NZ_CP040309:3213100-3213371 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
