Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3306221..3306492 | Replicon | chromosome |
| Accession | NZ_CP040307 | ||
| Organism | Escherichia coli strain F1 E4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3306259..3306362 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3306221..3306492 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FEL01_RS16390 | 3303378..3304817 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FEL01_RS16395 | 3304935..3305171 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FEL01_RS16400 | 3305276..3305467 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FEL01_RS16405 | 3305468..3306124 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 3306221..3306492 | + | 272 | - | - | Antitoxin |
| - | 3306259..3306362 | - | 104 | - | - | Toxin |
| FEL01_RS16410 | 3306520..3306861 | - | 342 | WP_000976483.1 | YebY family protein | - |
| FEL01_RS16415 | 3306874..3307746 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| FEL01_RS16420 | 3307750..3308124 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| FEL01_RS16425 | 3308263..3308493 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FEL01_RS16430 | 3308595..3309251 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein | - |
| FEL01_RS16435 | 3309275..3309937 | + | 663 | WP_000944243.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T125330 NZ_CP040307:c3306362-3306259 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT125330 NZ_CP040307:3306221-3306492 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
