Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) hicAB/UPF0150(antitoxin)
Location 2671505..2672143 Replicon chromosome
Accession NZ_CP040305
Organism Escherichia coli strain HB6

Toxin (Protein)


Gene name hicA Uniprot ID S1F9G9
Locus tag FEL06_RS12985 Protein ID WP_000813794.1
Coordinates 2671967..2672143 (-) Length 59 a.a.

Antitoxin (Protein)


Gene name hicB Uniprot ID -
Locus tag FEL06_RS12980 Protein ID WP_001270286.1
Coordinates 2671505..2671921 (-) Length 139 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FEL06_RS12960 2666657..2667598 - 942 WP_001251315.1 ABC transporter permease -
FEL06_RS12965 2667599..2668612 - 1014 WP_000220402.1 ABC transporter ATP-binding protein -
FEL06_RS12970 2668630..2669775 - 1146 WP_000047432.1 ABC transporter substrate-binding protein -
FEL06_RS12975 2670020..2671426 - 1407 WP_000760654.1 PLP-dependent aminotransferase family protein -
FEL06_RS12980 2671505..2671921 - 417 WP_001270286.1 type II toxin-antitoxin system antitoxin HicB Antitoxin
FEL06_RS12985 2671967..2672143 - 177 WP_000813794.1 type II toxin-antitoxin system mRNA interferase toxin HicA Toxin
FEL06_RS12990 2672365..2672595 + 231 WP_000494244.1 YncJ family protein -
FEL06_RS12995 2672687..2674648 - 1962 WP_001303492.1 23S rRNA 5-hydroxycytidine C2501 synthase -
FEL06_RS13000 2674721..2675257 - 537 WP_000429145.1 DNA-binding transcriptional regulator SutR -
FEL06_RS13005 2675310..2676521 + 1212 WP_071525382.1 BenE family transporter YdcO -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

HicA mRNA interferase family

(5-57)

Antitoxin

Cro/C1-type helix-turn-helix domain

(91-134)


Sequences

Toxin        


Download         Length: 59 a.a.        Molecular weight: 6749.83 Da        Isoelectric Point: 11.2298

>T125305 WP_000813794.1 NZ_CP040305:c2672143-2671967 [Escherichia coli]
VKQSEFRRWLESQGVDVANGSNHLKLRFHGRRSVMPRHPCDEIKEPLRKAILKQLGLS

Download         Length: 177 bp

>T125305 NZ_CP040305:c2672143-2671967 [Escherichia coli]
GTGAAACAAAGCGAGTTCAGACGTTGGCTCGAATCTCAGGGCGTCGATGTAGCGAATGGCAGCAACCATTTGAAACTCAG
GTTTCATGGGAGGCGCAGTGTCATGCCGCGTCACCCCTGCGATGAGATTAAAGAACCATTGCGTAAAGCAATCCTGAAAC
AACTCGGTTTGAGTTAA

Antitoxin


Download         Length: 139 a.a.        Molecular weight: 15246.63 Da        Isoelectric Point: 4.7386

>AT125305 WP_001270286.1 NZ_CP040305:c2671921-2671505 [Escherichia coli]
MRYPVTLTPAPEGGYMVSFVDIPEALTQGETVAEAMEAAKDALLTAFDFYFEDNELIPLPSPLNSHDHFIEVPLSVASKV
LLLNAFLQSEITQQELARRIGKPKQEITRLFNLHHATKIDAVQLAAKALGKELSLVMV

Download         Length: 417 bp

>AT125305 NZ_CP040305:c2671921-2671505 [Escherichia coli]
ATGCGTTATCCCGTCACTCTTACACCCGCGCCGGAAGGCGGTTATATGGTTTCTTTTGTGGATATCCCTGAAGCGTTGAC
GCAGGGCGAAACTGTCGCTGAAGCGATGGAAGCGGCAAAAGATGCTTTACTGACCGCATTTGATTTTTATTTTGAAGATA
ACGAGCTTATCCCTTTACCTTCGCCATTAAATAGTCATGATCACTTTATTGAAGTACCTTTGAGCGTCGCCTCTAAGGTA
TTGCTGTTAAATGCTTTTTTACAGTCAGAAATCACTCAGCAAGAGTTAGCCAGGCGAATTGGCAAACCTAAACAAGAGAT
TACTCGCCTATTTAACTTGCATCATGCGACAAAAATCGACGCCGTCCAGCTCGCGGCAAAGGCGCTTGGCAAAGAGTTAT
CGCTGGTGATGGTTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6HPB

Antitoxin

Source ID Structure

References